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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043431 ID=TCONS_00043431|Name=TCONS_00043431|organism=Clytia hemisphaerica|type=transcript|length=304bp
AATTCacttttatgattttcaaatttccaacgtTACCCCCGTCTCGAgaa
tcactttcgattttgcacGGGCTTTTTGATCCTGCAGACGACCGACCAAG
CAGCCAGCAGAGAGCAGAGCAGACACAGAACACATCAACATCAAAATTAT
TGACAATCCtgttaaaattctttaaaaagaccATAGAATTGTAAAAGGAT
TCCCAATTCAAGATGTTGACGTGTATGTGTACCTGTATGAGAACATTTTG
AGCAAGAACAATAACTTCGAAATTTTAGAGAATTGTATGGCTTGATTATG
GATT Run BLAST on NCBI transcript from alignment at sc0004217:1261..5409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043431 ID=TCONS_00043431|Name=TCONS_00043431|organism=Clytia hemisphaerica|type=transcript|length=4149bp|location=Sequence derived from alignment at sc0004217:1261..5409+ (Clytia hemisphaerica)
AATTCacttttatgattttcaaatttccaacgtTACCCCCGTCTCGAgaa
tcactttcgattttgcacGGGCTTTTTGATCCTGCAGACGACCGACCAAG
CAGCCAGCAGAGAGCAGAGCAGACACAGAACACATCAACATCAAAATTAT
TGACAATCCtgttaaaattctttaaaaagaccATAGAATTGTAAAAGGTG
AGTTTGttaaatgattttctttccATCATAaagcttttataagaaatgaA
AGTGTTACAGAGTCATTTTCTGCAACTTACCAGCCCTAAGAAAAGCTTCC
CTTTTTATGCTTTTTATCAGGCCTTGAAGTGATGCTGAAACTTTACACTC
CCCACTCTGTgacgctgtggtatagtggtcattgaccttggttgctacgC
AGGAGACTGAGGTtcaattcccactcgcagcggttcacttggcaagtgaa
tgaacctttgcCCGGGTCAACCAATGCCATGTGAGGtgaggggggcgtac
gggtttgacggtgtgacggtattaacccttttttctgtcggtgtttcagt
gtttgaggaaaaaagtgacagtatttcggtgtcaaacatgccatgcggtg
acaaaacaaggatttttataattttttgctatcggtgttgacggtaatcc
aagaaatatgcgtcggtatctcggtgtctgcgacccccgtacgcccccct
ctGTGAGGGGGAATTGGGtactgtgagatcgggtaacttgcatcagtgga
ggcaaacatgcatagccctcaaatgaatgacctgctgtctggtcattaaa
atacaaagttaaatcaaaactaaaatgatagagtagagctgcgtagttaa
tttgttttgaaattttgctgctttgattggtcagtcatttgatggctatg
caagtttccctcaaCTGATgcatgcaagttacccgacttcacggtagtca
gttcaaggtgctgttcaaggtgctgacagggcgctaattgaaagcgtcta
tagttgcgaaaatgggcctTAAAAGCCTCATGCGACTCAACCAAATACCG
TGataggtcctaaagccgacagccatgcctaaagccgatggggtctttca
aagatacaaactaaaataaaaacaaacctttcgctgtgacgcaacgaaga
taccaaagtgtcaactaaactgagaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntgcttcttataacaaaacatatttttttattgcaatatgcacaacgtca
taaatgacaacagtagtaacagcatcataaaaagtaacgagatgttttga
ttttcaaaagtacacgaaaatataaaagaggtctgtgtatgagcgtgctc
attttgaaacgttacgtaatcaagcctggtttctattactttacactggc
acttggcttgattgcgggcctaggactttgtgtaaggatacatatagacg
gcgtatattacattatattatatattacatgataagaatacaaatagaca
acgtatattacaattattatgtattgcatgacaccttgctcctattctag
taaagataatatatgtcgtcaaagagtacacttaaatgaagagctgtccg
attgcgggccttccgtaaataaacatccggacttataggtggtaaaaagg
gcgttgatagttgccgcctcattgattcgatatttcagttagggaaacca
tccagaatcctgccattctataagccagcaaaaactaaatgacacttgta
aacttaagtttcttaccattttccatcgaaaacaatcaANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAACattactacttcccaaagccggagacc
agaGCAAATGATCTTCCTTGAtgagggcgcccttttggatctattgttaa
ctcatttaaaatggtggacagaaTTGCGGAATGATAAAGACGCCcgctgc
ttcgagggtggtaacgccaaaacgcccaatatgatcagccaacagaaggc
gagtttgttaccgcgcgagttacgtcatgcactccaccgtagcGAAAGCG
CGAACgacatttcacaattataagaatatcttatgtgcttaattctattt
gactttgagagctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAaaatgcgctggtta
attttgtttaaataggtgtgttctatcattgttgaaagtttgagaaattt
ctaccgacgcaaagattttttacagccaattaaaggcaaagtctgcttat
acttactgTGTTTGCTATATCGTCTAGGCAAACAATggtaaaaaaagaca
caaacgTAATTTGTTTATGAGTGCAGTTATGATTtatttgattgcggccg
cgtacaggaactcgccaaatgttcctaactgtatttgttattcaaattag
tgctaccacatccgcccttttttcaacttcgcgccatttttacaatttag
tctttgtttcttgatggaaaccagtccaagttgtttcgtatttttcctgc
acaagtcacttttattacaaaactgttatcgttttaaacatgagcaactg
atccagaataaaaggtaattatttttacaaatcacactttttaattacat
taattgacatcttgacattacagctatcttgttagatgttttgtttcgag
agttctagcaatagtttatcgttcaacttggagaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNg
gagagggaatgtttgtaaacatagaattttttttcataacagttatttgg
ggggtcggaattaggctgggctgtcggctttaggacctctcacggtagaT
GGATAGAGATAGACTCCCTTGGCCTTTGGTTATTTGCTGCATCAATCCTT
CACTTTAGTCACTCCAATCTAGATCTTTTCAATAATGCCTCAACCATCTT
AAACTAAGCAAATTGTTGGCGGTCTCACTCTACAACCGATACTTTTGGCT
GGCTAAAGTTGCAATCAATATTGGAATGAATAAACTATAACTATGATAAT
GCTGGGATATCTTGAATCATGGGCAAAATAGCAACAACTGCTAACCAGCT
GCTAACAGCCAATGAGAGATAAGCAAGTTGTTTTGGATAGACTTAGGTAT
AAAATGCTAGGAATAGTTGCTATCTTGCCCATCATTAAANgcaaaaaaaa
tttccataattatatttgactatcaaaagttacaggcattcttgtttcca
ctgccaattatatctggacagactttaataccAACAATCACGAAATATTT
GAACGTGCATGTAGTTTTCACCTCCCTGTCCAAAATACCTAGTGAAAACG
CTTTAAGTAAGGTTAATctaatctattttgaagaccgttccgaaaaaagt
ttgtttacattcactCAACTTTAGTATAGTAAAGTTTTTACATGCACATT
CAACGTTTTCTTGAATTGCCAGTTTACATTACGTTAGTATTATTTAAGTA
GTATTGATAGTGAGGGTATCAGAGTGGGATTGCCTGGAAGACTTTTGCTT
GTGGATACACAGCTAGCACTGGTGACATAATCTAACAAAACTTCAGCACT
GTAGTGCTGTGCGCTTTAAAATCTGTGACAGAGTGAAAATCAAATaccat
agtttttgaaattttctttcttttctttttatacctATTCAGGATTCCCA
ATTCAAGATGTTGACGTGTATGTGTACCTGTATGAGAACATTTTGAGCAA
GAACAATAACTTCGAAATTTTAGAGAATTGTATGGCTTGATTATGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043431-exon-sc0004217-1491911889:1261..1457 | TCONS_00043431-exon-sc0004217-1491911889:1261..1457 | Clytia hemisphaerica | exon |
| TCONS_00043431-exon-sc0004217-1510915933:1261..1457 | TCONS_00043431-exon-sc0004217-1510915933:1261..1457 | Clytia hemisphaerica | exon |
| TCONS_00043431-exon-sc0004217-1575043694:1261..1457 | TCONS_00043431-exon-sc0004217-1575043694:1261..1457 | Clytia hemisphaerica | exon |
| TCONS_00043431-exon-sc0004217-1491911889:5303..5409 | TCONS_00043431-exon-sc0004217-1491911889:5303..5409 | Clytia hemisphaerica | exon |
| TCONS_00043431-exon-sc0004217-1510915933:5303..5409 | TCONS_00043431-exon-sc0004217-1510915933:5303..5409 | Clytia hemisphaerica | exon |
| TCONS_00043431-exon-sc0004217-1575043694:5303..5409 | TCONS_00043431-exon-sc0004217-1575043694:5303..5409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004217 | supercontig | sc0004217:1261..5409 + |
Blast
The following BLAST results are available for this feature:
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