TCONS_00043415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043415
Unique NameTCONS_00043415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043415 ID=TCONS_00043415|Name=TCONS_00043415|organism=Clytia hemisphaerica|type=transcript|length=863bp
ATCAGAGAGATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGA
AAAAGTTACTTAATTAATAACATTAGAGCTTTACTGAAGGAGAAATGTAT
TGTATCAGCCTACTTTGGAATAGCTGCATTTAATATTAATGCTCGATATC
TAATGAATGTCACAAACACAATTCAATGATGCTTTTACATGATTTTTCCT
GAAGGTCATTTTCAAAGCTTATTCATCAAAACAAGAAATTATTTCAATCA
TCAACCTTCGTAACGTTAATTTATAACTCGACCTTCGCTGATTCGTTATC
ATGTTCTTACTTTATTGTTACCTGTTACCTTTTTGCTATTTGTTCAACCA
TTTCCCTTGATGTCCTGGTGTATGTGTCTGTTCAAATCAATTTCTTATAT
TGCCTACACGATTGCTGTATTTGGATCTACAACTTATTACCAATAGATTA
GATTCAATGAAACCTAAACTTTATAAATCTTGCAATGGTGCTGACTTCTG
ACTTACATGTTGCTGATACAATGGCGGCTTTTTACCTGGTTGTATGCTTG
TGTTCTTGGTCGTTTAACTGTTAAATATCAAGCCATACAATGGGGTCTTT
GGAAATTGAATTGTGTTGAGACGGACTATTTTAAAGCAGGAAGCATATTT
TTATAAAGAGTTCTTTACATTTTAAACGATAATATTTTACACGAAAAATA
CCAATCTTATTATAATACATACATCTTATACAGTACTActtggaatttct
ttttttttacatctactcttgttatatttttataagGGTCTTTTTAATCA
GCTTCAACTTAGCCAAGTTCTATTTTTGAGTCTCAAATATGCTTATGTAG
AACGTGTTGCAAC
Run BLAST on NCBI

transcript from alignment at sc0004208:1352..3310-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043415 ID=TCONS_00043415|Name=TCONS_00043415|organism=Clytia hemisphaerica|type=transcript|length=1959bp|location=Sequence derived from alignment at sc0004208:1352..3310- (Clytia hemisphaerica)
ATCAGAGAGATCAGCTATTCATGATGATTACCGGGTTAGCAGGGAGTGGA
AAAAGTTACTTAATTAATAACATTAGAGCTTTACTGAAGGAGAAATGTAT
TGTATCAGCCTACTTTGGAATAGCTGCATTTAATATTAATGGTAAGACTT
TGCATTCTTTATTGAATCTTCCAATAAGAGGAAAAAACCGAAACGATTTG
AAGGGTCCTGCACTCTTAAGGCTACAAGAAAGACTCAGTGGAGTTAAATA
TATGATTATTGATGAGTATTCTGTTGTTGGTCAAAATATGCTAGGATGGA
TAGATAAACGGTGTAGACAAGGAACAGGTGAATCAGACAAAGCTTTTGGT
GGAATATCTATAATCTTGGTAGGAGATATTGCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAAAGATTTATTGGTTTA
GCGTATGTTGGGATCTCAAGAGTGAGAAAGCTAAAAGATATGATAATCGA
GCCAATGACATTAGAACGATTACAAGATATTAAGAAAAGGAAAAATTTTA
AATTTCGAGAATTAGAAGAACAGAAAATTAACGGTTTGGCACTAGAAACT
GAGACAAGATTGATTTGATAAGGGTGTACATTGATGAGAACTAAACGTTT
TTAATGACTGGGTGGGTGGTAATACATTTTCAAAATTGTAAATAATGATT
TTTCTATTTAAAGCTCGATATCTAATGAATGTCACAAACACAATTCAATG
ATGCTTTTACATGATTTTTCCTGAAGGTAAGAGTGGTAATTTTTTGGTTG
TCATGAGTATTTGATTTTTTTATTTAGTTTGTACCAGAAAAAAGCACAAT
CAATTGCGACTCTTTTTGGGCCAATTTTCCATGACGTCATTTTTCAGTAC
AAAACCAATAGAAAATGATTTCAAAAAGACTTCAAAAATAAATTTAAACT
GGTTCATTAGAAAGACCTGGATAGAAAGAGTAAATAATTAGAAAGAGTAG
ATAACGAAAATTGGGTTATTTGCCAAATTTCAGCCACTTTATTTTCAAGG
TAAAACCCTAATTCCCACATACTAGTTTCCTTATCAACTTGTTCGTATAT
GACTTTCTGACTTAACAAATAAGTGGCTTGATTTTCTTTCCCTTTTTTAG
GTCATTTTCAAAGCTTATTCATCAAAACAAGAAATTATTTCAATCATCAA
CCTTCGTAACGTTAATTTATAACTCGACCTTCGCTGATTCGTTATCATGT
TCTTACTTTATTGTTACCTGTTACCTTTTTGCTATTTGTTCAACCATTTC
CCTTGATGTCCTGGTGTATGTGTCTGTTCAAATCAATTTCTTATATTGCC
TACACGATTGCTGTATTTGGATCTACAACTTATTACCAATAGATTAGATT
CAATGAAACCTAAACTTTATAAATCTTGCAATGGTGCTGACTTCTGACTT
ACATGTTGCTGATACAATGGCGGCTTTTTACCTGGTTGTATGCTTGTGTT
CTTGGTCGTTTAACTGTTAAATATCAAGCCATACAATGGGGTCTTTGGAA
ATTGAATTGTGTTGAGACGGACTATTTTAAAGCAGGAAGCATATTTTTAT
AAAGAGTTCTTTACATTTTAAACGATAATATTTTACACGAAAAATACCAA
TCTTATTATAATACATACATCTTATACAGTACTACTTGGAATTTCTTTTT
TTTTACATCTACTCTTGTTATATTTTTATAAGGGTCTTTTTAATCAGCTT
CAACTTAGCCAAGTTCTATTTTTGAGTCTCAAATATGCTTATGTAGAACG
TGTTGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027114XLOC_027114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043415-exon-sc0004208-1575043694:3170..3310TCONS_00043415-exon-sc0004208-1575043694:3170..3310Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1575043694:2385..2447TCONS_00043415-exon-sc0004208-1575043694:2385..2447Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1575043694:1352..2010TCONS_00043415-exon-sc0004208-1575043694:1352..2010Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1510915933:3170..3310TCONS_00043415-exon-sc0004208-1510915933:3170..3310Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1510915933:2385..2447TCONS_00043415-exon-sc0004208-1510915933:2385..2447Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1510915933:1352..2010TCONS_00043415-exon-sc0004208-1510915933:1352..2010Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1491911889:3170..3310TCONS_00043415-exon-sc0004208-1491911889:3170..3310Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1491911889:2385..2447TCONS_00043415-exon-sc0004208-1491911889:2385..2447Clytia hemisphaericaexon
TCONS_00043415-exon-sc0004208-1491911889:1352..2010TCONS_00043415-exon-sc0004208-1491911889:1352..2010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004208supercontigsc0004208:1352..3310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.8523	1.02073	6.13743	6.0937	4.47837	2.31176	5.40102	3.57241	3.81374	4.73486	0.0324529	0	0	0.0435871	0.180094	0	0	0	0	0	3.33898	4.83344	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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