TCONS_00043411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043411
Unique NameTCONS_00043411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043411 ID=TCONS_00043411|Name=TCONS_00043411|organism=Clytia hemisphaerica|type=transcript|length=470bp
gaaatgaaaccacttatttcccatccagaacgcccgcgcgtagtttttac
acaaacaccggattgaaactaaaatctatcgaaAGATTTCATAAAAAGTG
TAGTCCtctaaaacaaaggaaccgctagatacaatctgtcgtcatgatta
cggcgcgtacTATGCgcattttggatgggaaataagtggcttcaatttct
cttgcctgagaagggttaaagccCTTCGAGCTTGAAACCCAATGGTAATT
ACCCTggtaaatgaaaataaattagtaAACCTCAAAAATCGTACTGACAA
TCAACTAGCACGACATATTATGAGAAAATTGTATACTATCAACACATCTA
GAGAAAATATGTACAGCATTAGGTCAGGGATGCAAATAAGAATTTCAAGT
GCTTCGGTCATGAAAATTTAAATGCAGTTAGAGACGTTCCCTAATAGGAA
TAGAATCATAGACTGTGACC
Run BLAST on NCBI

transcript from alignment at sc0004207:69..538

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043411 ID=TCONS_00043411|Name=TCONS_00043411|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0004207:69..538 (Clytia hemisphaerica)
GGTCACAGTCTATGATTCTATTCCTATTAGGGAACGTCTCTAACTGCATT
TAAATTTTCATGACCGAAGCACTTGAAATTCTTATTTGCATCCCTGACCT
AATGCTGTACATATTTTCTCTAGATGTGTTGATAGTATACAATTTTCTCA
TAATATGTCGTGCTAGTTGATTGTCAGTACGATTTTTGAGGTTtactaat
ttattttcatttaccAGGGTAATTACCATTGGGTTTCAAGCTCGAAGggc
tttaacccttctcaggcaagagaaattgaagccacttatttcccatccaa
aatgcGCATAgtacgcgccgtaatcatgacgacagattgtatctagcggt
tcctttgttttagaGGACTACACTTTTTATGAAATCTttcgatagatttt
agtttcaatccggtgtttgtgtaaaaactacgcgcgggcgttctggatgg
gaaataagtggtttcatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027111XLOC_027111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043411-exon-sc0004207-1491911889:69..538TCONS_00043411-exon-sc0004207-1491911889:69..538Clytia hemisphaericaexon
TCONS_00043411-exon-sc0004207-1510915933:69..538TCONS_00043411-exon-sc0004207-1510915933:69..538Clytia hemisphaericaexon
TCONS_00043411-exon-sc0004207-1575043694:69..538TCONS_00043411-exon-sc0004207-1575043694:69..538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004207supercontigsc0004207:69..538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150355	0.579254	1.66156	1.86938	0	0.146634	0.189244	0.342222	0.23282	0	0.618666	0.662004	0.189318	0.102729	0.342419	0.343734	0.572888	1.06003	0.163365	0.359188	1.62594	0.848261	0.358092	0	0.159901	0.14106	0.219777	0.764737	0.406292	0.225657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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