TCONS_00043407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043407
Unique NameTCONS_00043407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043407 ID=TCONS_00043407|Name=TCONS_00043407|organism=Clytia hemisphaerica|type=transcript|length=475bp
AACCAGCAAAAACGGGTCCAGATGTTACGTTTACCAAACTTTGTGAAACA
TCATTTCCCAATAAAATATTACGTTTCCACCCATATTTGGAATTGTGTTT
GAATTAGGGTATGGTCGAAAATGGATCTAGATTTAACTTTTCCCAAACTT
TGTATAAAAGCACTTCTCAATGTAGAACTTAGCTTATCCAAACTTGTCCT
GAAACTGTTTAAATTAGGGAATGGTCGAAAATGATTCTAGATTTTACTCT
TCCCAAACTTTGTAAAAAAGCACTTCCCAATGTAGAACTTAGCTTGTCCA
AAATTGTCCTTAAACTGGCTAAATTAGGAAATGGTCGAAAATGGATCTGG
GTTCTACTTTAAAGCACGTTTGAAATGCAATCTGAATATAGGTTTCTTGC
TTGTTTCTATAATATCTAAAATACAATTATATTGAAGAacgattttatta
aaataaagtAACAAATACAGTACTT
Run BLAST on NCBI

transcript from alignment at sc0004200:6293..6767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043407 ID=TCONS_00043407|Name=TCONS_00043407|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0004200:6293..6767 (Clytia hemisphaerica)
AAGTACTGTATTTGTTactttattttaataaaatcgtTCTTCAATATAAT
TGTATTTTAGATATTATAGAAACAAGCAAGAAACCTATATTCAGATTGCA
TTTCAAACGTGCTTTAAAGTAGAACCCAGATCCATTTTCGACCATTTCCT
AATTTAGCCAGTTTAAGGACAATTTTGGACAAGCTAAGTTCTACATTGGG
AAGTGCTTTTTTACAAAGTTTGGGAAGAGTAAAATCTAGAATCATTTTCG
ACCATTCCCTAATTTAAACAGTTTCAGGACAAGTTTGGATAAGCTAAGTT
CTACATTGAGAAGTGCTTTTATACAAAGTTTGGGAAAAGTTAAATCTAGA
TCCATTTTCGACCATACCCTAATTCAAACACAATTCCAAATATGGGTGGA
AACGTAATATTTTATTGGGAAATGATGTTTCACAAAGTTTGGTAAACGTA
ACATCTGGACCCGTTTTTGCTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027107XLOC_027107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043407-exon-sc0004200-1491911889:6293..6767TCONS_00043407-exon-sc0004200-1491911889:6293..6767Clytia hemisphaericaexon
TCONS_00043407-exon-sc0004200-1510915933:6293..6767TCONS_00043407-exon-sc0004200-1510915933:6293..6767Clytia hemisphaericaexon
TCONS_00043407-exon-sc0004200-1575043694:6293..6767TCONS_00043407-exon-sc0004200-1575043694:6293..6767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004200supercontigsc0004200:6293..6767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133375	0.568118	0.571675	0.772981	2.01045	1.7446	1.75738	1.57057	0.56253	0.877395	0.135127	0.205793	0.227874	0	0.378674	0.081275	0	0.205248	0	0	0.144586	0.470542	0.232386	0	0	0.383405	0.548651	1.25947	0.184971	0.394328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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