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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043403 ID=TCONS_00043403|Name=TCONS_00043403|organism=Clytia hemisphaerica|type=transcript|length=711bp
GGCCTCTTTATGCGTTTTGGATGTATGCGTACGAGCGCATGAACTCCTGG
ATCACAAGGAGAGTTATGAGCCGGTCAAAAATGGAAGAATGCATCATGGA
GACTGTTCAAATTCTTGATTGGGTTCTCTTCTCCCAATTTATGGGAAAAT
TTCAACATCTTCATGATCGGGATAACAACCTTTGCTCGTTGAGTAACATT
ATGCTTCACCAGGAGGGCGTGATCGAAAATATTGACAAAGGGAAAGAATG
TAACCTGACACAAGCGCAAAAAGATCTTTACCGCACAAATGAGATGTCAG
GTAAACGCTACAAGAAATTTGAGCCATCTTTCGATAACATTGAAGACCAG
GTCCCATATAAAGTTGGTGAATACTGTTATTGTTTGTTGAGGGAGAAGTT
TGTACAAATCATTGATATGATAAAGATTGGTGATAATCTACACGCAGAAA
TTGCAGTCTTTGAATCAATTAAAGATCCCGAAACTGGCTTGTACTATGGG
AGCAATGTAAGCCTTGAAAAAGATGCAGTATTGATTGAAAACCTTTCAAG
ACCAATAATTGTTGCTGTGGAAGACAATTACATCTGGTTCGTGGGTTATG
AAACTTCAGAGGAATTTTCATGGTTTCATGAACATTTAAAGCTTTAAATA
TGATAGTCGAAGCAGtaaaattattaatttattgaataccttattgaaac
taattttcgtg Run BLAST on NCBI protein sequence of TCONS_00043403-protein >TCONS_00043403-protein ID=TCONS_00043403-protein|Name=TCONS_00043403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
PLYAFWMYAYERMNSWITRRVMSRSKMEECIMETVQILDWVLFSQFMGKF
QHLHDRDNNLCSLSNIMLHQEGVIENIDKGKECNLTQAQKDLYRTNEMSG
KRYKKFEPSFDNIEDQVPYKVGEYCYCLLREKFVQIIDMIKIGDNLHAEI
AVFESIKDPETGLYYGSNVSLEKDAVLIENLSRPIIVAVEDNYIWFVGYE
TSEEFSWFHEHLKL Run BLAST on NCBI transcript from alignment at sc0004195:5916..6916- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043403 ID=TCONS_00043403|Name=TCONS_00043403|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at sc0004195:5916..6916- (Clytia hemisphaerica)
GGCCTCTTTATGCGTTTTGGATGTATGCGTACGAGCGCATGAACTCCTGG
ATCACAAGGAGAGTTATGAGCCGGTCAAAAATGGAAGAATGCATCATGGA
GACTGTTCAAGTAAGATTAATTTACCTTATTAGCTAAAGATACTACTTTA
CTAGAATGGTGCGTCATGTCGACCTCAAATTCGTAGATACAGCAACATTT
TTTATATCTTTTCCATTCTTATGCACTAATGATACATTTGACACTCTCAA
TTTGACGGTTTACTACTCAATGAATTCCGTACAATCTTTATCATTCTAAG
GGCTTTTGATGCGCAAGCCAAACCGGCCTTTGCGACGACAGGAACCGTCT
AGTTTGCGCTAATTTTATTTTGAATAATTTTTAAACTTCATTATTTTTAG
ATTCTTGATTGGGTTCTCTTCTCCCAATTTATGGGAAAATTTCAACATCT
TCATGATCGGGATAACAACCTTTGCTCGTTGAGTAACATTATGCTTCACC
AGGAGGGCGTGATCGAAAATATTGACAAAGGGAAAGAATGTAACCTGACA
CAAGCGCAAAAAGATCTTTACCGCACAAATGAGATGTCAGGTAAACGCTA
CAAGAAATTTGAGCCATCTTTCGATAACATTGAAGACCAGGTCCCATATA
AAGTTGGTGAATACTGTTATTGTTTGTTGAGGGAGAAGTTTGTACAAATC
ATTGATATGATAAAGATTGGTGATAATCTACACGCAGAAATTGCAGTCTT
TGAATCAATTAAAGATCCCGAAACTGGCTTGTACTATGGGAGCAATGTAA
GCCTTGAAAAAGATGCAGTATTGATTGAAAACCTTTCAAGACCAATAATT
GTTGCTGTGGAAGACAATTACATCTGGTTCGTGGGTTATGAAACTTCAGA
GGAATTTTCATGGTTTCATGAACATTTAAAGCTTTAAATATGATAGTCGA
AGCAGTAAAATTATTAATTTATTGAATACCTTATTGAAACTAATTTTCGT
G Coding sequence (CDS) from alignment at sc0004195:5916..6916- >TCONS_00043403 ID=TCONS_00043403|Name=TCONS_00043403|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0004195:5916..6916- (Clytia hemisphaerica)
ATTCTTGATTGGGTTCTCTTCTCCCAATTTATGGGAAAATTTCAACATCT
TCATGATCGGGATAACAACCTTTGCTCGTTGAGTAACATTATGCTTCACC
AGGAGGGCGTGATCGAAAATATTGACAAAGGGAAAGAATGTAACCTGACA
CAAGCGCAAAAAGATCTTTACCGCACAAATGAGATGTCAGGTAAACGCTA
CAAGAAATTTGAGCCATCTTTCGATAACATTGAAGACCAGGTCCCATATA
AAGTTGGTGAATACTGTTATTGTTTGTTGAGGGAGAAGTTTGTACAAATC
ATTGATATGATAAAGATTGGTGATAATCTACACGCAGAAATTGCAGTCTT
TGAATCAATTAAAGATCCCGAAACTGGCTTGTACTATGGGAGCAATGTAA
GCCTTGAAAAAGATGCAGTATTGATTGAAAACCTTTCAAGACCAATAATT
GTTGCTGTGGAAGACAATTACATCTGGTTCGTGGGTTATGAAACTTCAGA
GGAATTTTCATGGTTTCATGAACATTTAAAGCTTTAACCTCTTTATGCGT
TTTGGATGTATGCGTACGAGCGCATGAACTCCTGGATCACAAGGAGAGTT
ATGAGCCGGTCAAAAATGGAAGAATGCATCATGGAGACTGTTCAAATTCT
TGATTGGGTTCTCTTCTCCCAATTTATGGGAAAATTTCAACATCTTCATG
ATCGGGATAACAACCTTTGCTCGTTGAGTAACATTATGCTTCACCAGGAG
GGCGTGATCGAAAATATTGACAAAGGGAAAGAATGTAACCTGACACAAGC
GCAAAAAGATCTTTACCGCACAAATGAGATGTCAGGTAAACGCTACAAGA
AATTTGAGCCATCTTTCGATAACATTGAAGACCAGGTCCCATATAAAGTT
GGTGAATACTGTTATTGTTTGTTGAGGGAGAAGTTTGTACAAATCATTGA
TATGATAAAGATTGGTGATAATCTACACGCAGAAATTGCAGTCTTTGAAT
CAATTAAAGATCCCGAAACTGGCTTGTACTATGGGAGCAATGTAAGCCTT
GAAAAAGATGCAGTATTGATTGAAAACCTTTCAAGACCAATAATTGTTGC
TGTGGAAGACAATTACATCTGGTTCGTGGGTTATGAAACTTCAGAGGAAT
TTTCATGGTTTCATGAACATTTAAAGCTTTAACCTCTTTATGCGTTTTGG
ATGTATGCGTACGAGCGCATGAACTCCTGGATCACAAGGAGAGTTATGAG
CCGGTCAAAAATGGAAGAATGCATCATGGAGACTGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043403-exon-sc0004195-1575043694:6807..6916 | TCONS_00043403-exon-sc0004195-1575043694:6807..6916 | Clytia hemisphaerica | exon |
| TCONS_00043403-exon-sc0004195-1575043694:5916..6516 | TCONS_00043403-exon-sc0004195-1575043694:5916..6516 | Clytia hemisphaerica | exon |
| TCONS_00043403-exon-sc0004195-1510915933:6807..6916 | TCONS_00043403-exon-sc0004195-1510915933:6807..6916 | Clytia hemisphaerica | exon |
| TCONS_00043403-exon-sc0004195-1510915933:5916..6516 | TCONS_00043403-exon-sc0004195-1510915933:5916..6516 | Clytia hemisphaerica | exon |
| TCONS_00043403-exon-sc0004195-1491911889:6807..6916 | TCONS_00043403-exon-sc0004195-1491911889:6807..6916 | Clytia hemisphaerica | exon |
| TCONS_00043403-exon-sc0004195-1491911889:5916..6516 | TCONS_00043403-exon-sc0004195-1491911889:5916..6516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004195 | supercontig | sc0004195:5916..6916 - |
Blast
The following BLAST results are available for this feature:
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