TCONS_00043371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043371
Unique NameTCONS_00043371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043371 ID=TCONS_00043371|Name=TCONS_00043371|organism=Clytia hemisphaerica|type=transcript|length=327bp
CCTGGGTCTACACAACGACACAGCCTTCGAATGTTGGGATCAATAAAGGT
GGAGGTTGTGCATATGATTTTCTCAGGTACTCCAATAAACCCTTGACATT
CATTAGCAGTGACGTCATAAGATGGGTGATATTCCTCGGCATAAAGAGAG
TTCGCATCATTGACGACGCATGTCAAATTGGCAGATTTTGTTAGCTCTAC
TGGATCACGTGCGTTTTCAATAATGTCTTTCGAGTCACGTGTATCGATGA
CGGTTAGACAACCATAAGTGTCGTTGACCTTCTTGCATGTTCTCTCACAA
TCGACGGCTGGTTCTGACAGATAGTAt
Run BLAST on NCBI

protein sequence of TCONS_00043371-protein

>TCONS_00043371-protein ID=TCONS_00043371-protein|Name=TCONS_00043371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
YYLSEPAVDCERTCKKVNDTYGCLTVIDTRDSKDIIENARDPVELTKSAN
LTCVVNDANSLYAEEYHPSYDVTANECQGFIGVPEKIICTTSTFIDPNIR
RLCRCVDP
Run BLAST on NCBI

transcript from alignment at sc0004165:3709..4035

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043371 ID=TCONS_00043371|Name=TCONS_00043371|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0004165:3709..4035 (Clytia hemisphaerica)
aTACTATCTGTCAGAACCAGCCGTCGATTGTGAGAGAACATGCAAGAAGG
TCAACGACACTTATGGTTGTCTAACCGTCATCGATACACGTGACTCGAAA
GACATTATTGAAAACGCACGTGATCCAGTAGAGCTAACAAAATCTGCCAA
TTTGACATGCGTCGTCAATGATGCGAACTCTCTTTATGCCGAGGAATATC
ACCCATCTTATGACGTCACTGCTAATGAATGTCAAGGGTTTATTGGAGTA
CCTGAGAAAATCATATGCACAACCTCCACCTTTATTGATCCCAACATTCG
AAGGCTGTGTCGTTGTGTAGACCCAGG

Coding sequence (CDS) from alignment at sc0004165:3709..4035

>TCONS_00043371 ID=TCONS_00043371|Name=TCONS_00043371|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0004165:3709..4035 (Clytia hemisphaerica)
TACTATCTGTCAGAACCAGCCGTCGATTGTGAGAGAACATGCAAGAAGGT
CAACGACACTTATGGTTGTCTAACCGTCATCGATACACGTGACTCGAAAG
ACATTATTGAAAACGCACGTGATCCAGTAGAGCTAACAAAATCTGCCAAT
TTGACATGCGTCGTCAATGATGCGAACTCTCTTTATGCCGAGGAATATCA
CCCATCTTATGACGTCACTGCTAATGAATGTCAAGGGTTTATTGGAGTAC
CTGAGAAAATCATATGCACAACCTCCACCTTTATTGATCCCAACATTCGA
AGGCTGTGTCGTTGTGTAGACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027076XLOC_027076Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043371-proteinTCONS_00043371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043371-exon-sc0004165-1491911889:3709..4035TCONS_00043371-exon-sc0004165-1491911889:3709..4035Clytia hemisphaericaexon
TCONS_00043371-exon-sc0004165-1510915933:3709..4035TCONS_00043371-exon-sc0004165-1510915933:3709..4035Clytia hemisphaericaexon
TCONS_00043371-exon-sc0004165-1575043694:3709..4035TCONS_00043371-exon-sc0004165-1575043694:3709..4035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004165supercontigsc0004165:3709..4035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.293176	0.340405	0.333033	0	0.320381	1.15958	0	0.506695	0.627623	0	0.200228	2.99924	2.90709	0.682864	2.01525	0	0.231328	1.59796	7.35746	0.581361	0.425351	0	0.313394	1.61394	3.45698	0.412243	0	1.66846	1.6999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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