TCONS_00043346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043346
Unique NameTCONS_00043346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043346 ID=TCONS_00043346|Name=TCONS_00043346|organism=Clytia hemisphaerica|type=transcript|length=703bp
TTCGTTATTAGTTTCTTTTATATATGCATTTGTCTATGAACGAGTATCTA
CAAAAATAATTTGCCATAATagccataataaataaatagagTAAAAATGT
ATCCAGCCATCATACTCACCAAATGAATACCTCAAAGCTATTTGCTAGAA
TTTAGATCGTTTTGCACATTGGAGATAATTGACAATTCACCCAAAAAAAC
TACAATCCAAACTTCAGTTTCATACTCTGAAATTGTTGCTATGTATGTAG
ATTTTGCAAATGAATTCTTGGCAGGTTAGTCACGGGCCAAAATTATATAG
ACGTAATTTCAAATACTTGTATAAAATACGGGCNTTAGTCACGGGCCAAA
ATTATATAGACGTAATTTCAAATACTTGTATAAAATACGGGCTATCTTCT
AATTACATTTTAGTTATTGGTCCAAaaggtaaaaaatcaaaattatcaat
aaCCCATTTATTTTCCACGACATTTTTCTCTCCAACATGCACAATAATCT
CCGCAGGCTGGTTGCTGGTTACAAAAGTTCTTTGCAAATGTACAACATCT
ATTCCTTTGACCAAAATGACTGACTTCTCCACACGACCGAAATGAACCTG
AAAAATAAACGGGTGTCGTATGAAAACATTGAGCcatgagaaaaacaaaa
aaaatcattaaaagccGTCGGAAAGCCATAAAATAATTATTAGATAGTTT
GAG
Run BLAST on NCBI

transcript from alignment at sc0004138:4255..4957

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043346 ID=TCONS_00043346|Name=TCONS_00043346|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0004138:4255..4957 (Clytia hemisphaerica)
CTCAAACTATCTAATAATTATTTTATGGCTTTCCGACggcttttaatgat
tttttttgtttttctcatgGCTCAATGTTTTCATACGACACCCGTTTATT
TTTCAGGTTCATTTCGGTCGTGTGGAGAAGTCAGTCATTTTGGTCAAAGG
AATAGATGTTGTACATTTGCAAAGAACTTTTGTAACCAGCAACCAGCCTG
CGGAGATTATTGTGCATGTTGGAGAGAAAAATGTCGTGGAAAATAAATGG
GttattgataattttgattttttaccttTTGGACCAATAACTAAAATGTA
ATTAGAAGATAGCCCGTATTTTATACAAGTATTTGAAATTACGTCTATAT
AATTTTGGCCCGTGACTAANGCCCGTATTTTATACAAGTATTTGAAATTA
CGTCTATATAATTTTGGCCCGTGACTAACCTGCCAAGAATTCATTTGCAA
AATCTACATACATAGCAACAATTTCAGAGTATGAAACTGAAGTTTGGATT
GTAGTTTTTTTGGGTGAATTGTCAATTATCTCCAATGTGCAAAACGATCT
AAATTCTAGCAAATAGCTTTGAGGTATTCATTTGGTGAGTATGATGGCTG
GATACATTTTTActctatttatttattatggctATTATGGCAAATTATTT
TTGTAGATACTCGTTCATAGACAAATGCATATATAAAAGAAACTAATAAC
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027051XLOC_027051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043346-exon-sc0004138-1491911889:4255..4957TCONS_00043346-exon-sc0004138-1491911889:4255..4957Clytia hemisphaericaexon
TCONS_00043346-exon-sc0004138-1510915933:4255..4957TCONS_00043346-exon-sc0004138-1510915933:4255..4957Clytia hemisphaericaexon
TCONS_00043346-exon-sc0004138-1575043694:4255..4957TCONS_00043346-exon-sc0004138-1575043694:4255..4957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004138supercontigsc0004138:4255..4957 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0825775	0.0813152	0	0	0.0830461	0	0.0885199	0.0605191	0	0	0.116882	1.84247	0.658736	0	0.111733	2.16974	0.876863	8.00701	12.3726	7.3335	11.813	2.66195	3.98305	1.73482	2.26041	0.0984758	0	2.48566	1.58378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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