TCONS_00043338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043338
Unique NameTCONS_00043338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043338 ID=TCONS_00043338|Name=TCONS_00043338|organism=Clytia hemisphaerica|type=transcript|length=512bp
AAGGCTGCCAAATCGAAACAAGAGAAATTGATTGTTTGTGTTGTAATGAA
GTCGCAgccttaaatgaaaaatttgatcagGGAGACTTTCAGTGCATTAT
TGACTCACCACAATTCCCAAAAATGTGCCTTGACGAGGATATTTTGGGGA
ATGTACTGACTGGGCTACACGAGACAAAAGGAGATCATTTGGAAGAGATA
CCGTCGAATAGATCCCTAAGATACGCAGCAAACAGGCAATTTTCTTGGTG
GGTTTTCAAGAGATTGGGAAAAAACAATCGCCGAGTAATCCCATCATGTG
TGCTTTCAAAGATACGAAGTACCTTCCCTGACCCTGAAGGAAAATATACC
AAATATAAGGAAGGTGAAAAAGACTAGGGCGAATAATTTTGTTAACCTGT
GTGAATGAATATGTAATATACTAGATATAAAAAAGCTAGGATATAAAGAA
TACAATGTAAATGATCTAAAGAATATAATGTTGATACAgcttaaaaaaag
ataaaaaaatat
Run BLAST on NCBI

protein sequence of TCONS_00043338-protein

>TCONS_00043338-protein ID=TCONS_00043338-protein|Name=TCONS_00043338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
GCQIETREIDCLCCNEVAALNEKFDQGDFQCIIDSPQFPKMCLDEDILGN
VLTGLHETKGDHLEEIPSNRSLRYAANRQFSWWVFKRLGKNNRRVIPSCV
LSKIRSTFPDPEGKYTKYKEGEKD
Run BLAST on NCBI

transcript from alignment at sc0004129:4467..4978

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043338 ID=TCONS_00043338|Name=TCONS_00043338|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at sc0004129:4467..4978 (Clytia hemisphaerica)
atatttttttatctttttttaagcTGTATCAACATTATATTCTTTAGATC
ATTTACATTGTATTCTTTATATCCTAGCTTTTTTATATCTAGTATATTAC
ATATTCATTCACACAGGTTAACAAAATTATTCGCCCTAGTCTTTTTCACC
TTCCTTATATTTGGTATATTTTCCTTCAGGGTCAGGGAAGGTACTTCGTA
TCTTTGAAAGCACACATGATGGGATTACTCGGCGATTGTTTTTTCCCAAT
CTCTTGAAAACCCACCAAGAAAATTGCCTGTTTGCTGCGTATCTTAGGGA
TCTATTCGACGGTATCTCTTCCAAATGATCTCCTTTTGTCTCGTGTAGCC
CAGTCAGTACATTCCCCAAAATATCCTCGTCAAGGCACATTTTTGGGAAT
TGTGGTGAGTCAATAATGCACTGAAAGTCTCCctgatcaaatttttcatt
taaggcTGCGACTTCATTACAACACAAACAATCAATTTCTCTTGTTTCGA
TTTGGCAGCCTT

Coding sequence (CDS) from alignment at sc0004129:4467..4978

>TCONS_00043338 ID=TCONS_00043338|Name=TCONS_00043338|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0004129:4467..4978 (Clytia hemisphaerica)
CTAGTCTTTTTCACCTTCCTTATATTTGGTATATTTTCCTTCAGGGTCAG
GGAAGGTACTTCGTATCTTTGAAAGCACACATGATGGGATTACTCGGCGA
TTGTTTTTTCCCAATCTCTTGAAAACCCACCAAGAAAATTGCCTGTTTGC
TGCGTATCTTAGGGATCTATTCGACGGTATCTCTTCCAAATGATCTCCTT
TTGTCTCGTGTAGCCCAGTCAGTACATTCCCCAAAATATCCTCGTCAAGG
CACATTTTTGGGAATTGTGGTGAGTCAATAATGCACTGAAAGTCTCCctg
atcaaatttttcatttaaggcTGCGACTTCATTACAACACAAACAATCAA
TTTCTCTTGTTTCGATTTGGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027043XLOC_027043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043338-proteinTCONS_00043338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043338-exon-sc0004129-1491911889:4467..4978TCONS_00043338-exon-sc0004129-1491911889:4467..4978Clytia hemisphaericaexon
TCONS_00043338-exon-sc0004129-1510915933:4467..4978TCONS_00043338-exon-sc0004129-1510915933:4467..4978Clytia hemisphaericaexon
TCONS_00043338-exon-sc0004129-1575043694:4467..4978TCONS_00043338-exon-sc0004129-1575043694:4467..4978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004129supercontigsc0004129:4467..4978 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.117088	0.456718	0.194741	0.446726	2.17441	1.37252	0.904454	0.845577	0.325688	0.680176	0.181356	0.515573	0.180209	0.161741	0.265946	0.285401	0.2881	0.294208	0	0.130246	0.626002	0.496968	0.134251	0.122054	0.754275	0	0	0	0.212199	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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