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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043337 ID=TCONS_00043337|Name=TCONS_00043337|organism=Clytia hemisphaerica|type=transcript|length=1065bp
gatttctttcGATGAGTTAAAGCAAGCGATGGAGACTAAAAATATGGAAG
CTGCAAGTCTGCTCTTCAGTCAATGGAAAAAAGAAACAAAAGGACAGCAA
CAACATGAGGCAGCTGGGAAAATTGAAATAGGCAAAAAAGGAGCCACGAC
AAGCGACAGGAAGAGATGGCCATGTCCTGAATGTGGGAATACGCCCATTA
ATCTCGCCAGACATCTATCTACTGTCCACAAAGATTTAGGCTGGACAAAT
AAAAAAGCTGACAGGTATAAAAGAGAGAACAACATGCGGAAGGTCAGGAA
GGATAAATTGCCAACAACAACTCGGAGGGTAGTTAGGCATATTTGCCCAC
TTTGCGACAAGCCAGTCGATCGCATTCACGACCACCTTAAAAAATCCCCA
CACTGGATAGAGGACGAGAATGAATATAGAGCTCTTTTAAAGAAGAAAGT
GCTATACGAGCCAGGAATTCCAGTGAAACCATTATTAAAATCTAATATTG
TTCAGGAAATTATGGCATCAACAAAAATATCACATTCAATTCCTTTAAAA
ACCAATGACATTCAAGAATCAATTCCTTCAACCAATGACATTCAAGAATC
AATTCCTTTAACCAATGACATTCAAGAATCAATTCCTTCAACCAATGACA
TTCAAGAATCAATTCCTTACAATGACATTCAAGAGCCAGATCCAGCCGAA
CCAGCCGAAGACTTTGAAACGTGCTTAGGAAAGTATGAAAAGTACTTGTT
AAGCATTTCTGGTGGGAGAAAGTCAGTTAAAAATGCTTTTGACGAGAAAT
CCCAAATAAGGACATTGGCTAAACTTTGTTCGAATGGTGAACCACTCAGC
TATCGCAATGTACTCAATTTAAAGCTGGTGCAAGACGAGTACGTCTTCAA
ATACTCTAAAGAGAAGAAGCATACACCAGGAACAATCAAATCATACTTGC
TATCTCTCACACACTTTATGAATTTCCTGAAACGTTCCATTGAACGACCA
GACGCTGACAACATCGTTGTTGTTGATACCGATAAATTCCCAACTGAGAA
GCTGCTTGTTTTGGA Run BLAST on NCBI protein sequence of TCONS_00043337-protein >TCONS_00043337-protein ID=TCONS_00043337-protein|Name=TCONS_00043337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
ISFDELKQAMETKNMEAASLLFSQWKKETKGQQQHEAAGKIEIGKKGATT
SDRKRWPCPECGNTPINLARHLSTVHKDLGWTNKKADRYKRENNMRKVRK
DKLPTTTRRVVRHICPLCDKPVDRIHDHLKKSPHWIEDENEYRALLKKKV
LYEPGIPVKPLLKSNIVQEIMASTKISHSIPLKTNDIQESIPSTNDIQES
IPLTNDIQESIPSTNDIQESIPYNDIQEPDPAEPAEDFETCLGKYEKYLL
SISGGRKSVKNAFDEKSQIRTLAKLCSNGEPLSYRNVLNLKLVQDEYVFK
YSKEKKHTPGTIKSYLLSLTHFMNFLKRSIERPDADNIVVVDTDKFPTEK
LLVL Run BLAST on NCBI transcript from alignment at sc0004128:868..2779+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043337 ID=TCONS_00043337|Name=TCONS_00043337|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at sc0004128:868..2779+ (Clytia hemisphaerica)
gatttctttcGATGAGTTAAAGCAAGCGATGGAGACTAAAAATATGGAAG
CTGCAAGTCTGGTATTAATTTCTTCATTATATTGACCCTTAGAAACCTTC
ACGGAAAAATGGTCTTTGGGATACATCCAGGAACTAGCCTCTTACACACA
AAATAAATTATCAATGATAATCTTAAAATGCTTCAATCTTTTTTTCATTA
AGTACACCAGAGTACACAAAAGAAGGGCCCATCGTAATTATAACCATTTT
TCTTTGCTTCAAATTAAAGCTCTTCAGTCAATGGAAAAAAGAAACAAAAG
GACAGCAACAACATGAGGCAGCTGGGAAAATTGAAATAGGCAAAAAAGGA
GCCACGACAAGCGACAGGAAGAGATGGCCATGTCCTGAATGTGGGAATAC
GCCCATTAATCTCGCCAGACATCTATCTACTGTCCACAAAGATTTAGGCT
GGACAAATAAAAAAGCTGACAGGTATTTTATCCATTAAAAATTCCTGACA
ATATGTAGTTTCTTGAGTTTTTTGCTACCAACCTGCTCGACTTCAACGAC
ATAGATATGAAGAGAGGCTGTTTCAATTCAAGGTCTCTTTTTCAACCTGT
GGAAATATTTGACATGTTTCCAAAATAAGACAGCTTCAAGAAATTGTTCT
GGCAGGGCTCTTTTCGTAATTTTAACACTTTTTCAAAAATTTTGGCGTTT
TAACTCCAGGGTCCGAAAATTGAGCAAATTGAGCAAGTATTTCCTTATAA
CACCCCTGTGCCACAGACCCGGTAGACTCAGCCCCTCTGGAAAAAATGGC
TAAAAATTTCAACCTCACTGGGAAGTTAGGATATGACTTTATCCCCATTA
AAAACTGAATGGAAAAATAATGGACTAGAATTTCTGCGCTGGAAATATAT
TTTATTTCTCTATTAGTAGGACTTCGATAGAATTTTCACCCCCACTGAGG
GAAAAAGCTCCAACGGGGCACTGATACAGGGGTGTGTTAAATCATTATTA
GACCGGACCCATTTTAATCTCAAGTGATACGTCCCCATTGGTCGTCGAGA
TCGGTCTCCTGCGGGTCAGAGATATCACACTCACTATTTAATACTACCTT
TTACGTTGCAGGTATAAAAGAGAGAACAACATGCGGAAGGTCAGGAAGGA
TAAATTGCCAACAACAACTCGGAGGGTAGTTAGGCATATTTGCCCACTTT
GCGACAAGCCAGTCGATCGCATTCACGACCACCTTAAAAAATCCCCACAC
TGGATAGAGGACGAGAATGAATATAGAGCTCTTTTAAAGAAGAAAGTGCT
ATACGAGCCAGGAATTCCAGTGAAACCATTATTAAAATCTAATATTGTTC
AGGAAATTATGGCATCAACAAAAATATCACATTCAATTCCTTTAAAAACC
AATGACATTCAAGAATCAATTCCTTCAACCAATGACATTCAAGAATCAAT
TCCTTTAACCAATGACATTCAAGAATCAATTCCTTCAACCAATGACATTC
AAGAATCAATTCCTTACAATGACATTCAAGAGCCAGATCCAGCCGAACCA
GCCGAAGACTTTGAAACGTGCTTAGGAAAGTATGAAAAGTACTTGTTAAG
CATTTCTGGTGGGAGAAAGTCAGTTAAAAATGCTTTTGACGAGAAATCCC
AAATAAGGACATTGGCTAAACTTTGTTCGAATGGTGAACCACTCAGCTAT
CGCAATGTACTCAATTTAAAGCTGGTGCAAGACGAGTACGTCTTCAAATA
CTCTAAAGAGAAGAAGCATACACCAGGAACAATCAAATCATACTTGCTAT
CTCTCACACACTTTATGAATTTCCTGAAACGTTCCATTGAACGACCAGAC
GCTGACAACATCGTTGTTGTTGATACCGATAAATTCCCAACTGAGAAGCT
GCTTGTTTTGGA Coding sequence (CDS) from alignment at sc0004128:868..2779+ >TCONS_00043337 ID=TCONS_00043337|Name=TCONS_00043337|organism=Clytia hemisphaerica|type=CDS|length=3186bp|location=Sequence derived from alignment at sc0004128:868..2779+ (Clytia hemisphaerica)
atttctttcGATGAGTTAAAGCAAGCGATGGAGACTAAAAATATGGAAGC
TGCAAGTCTGCTCTTCAGTCAATGGAAAAAAGAAACAAAAGGACAGCAAC
AACATGAGGCAGCTGGGAAAATTGAAATAGGCAAAAAAGGAGCCACGACA
AGCGACAGGAAGAGATGGCCATGTCCTGAATGTGGGAATACGCCCATTAA
TCTCGCCAGACATCTATCTACTGTCCACAAAGATTTAGGCTGGACAAATA
AAAAAGCTGACAGGTATAAAAGAGAGAACAACATGCGGAAGGTCAGGAAG
GATAAATTGCCAACAACAACTCGGAGGGTAGTTAGGCATATTTGCCCACT
TTGCGACAAGCCAGTCGATCGCATTCACGACCACCTTAAAAAATCCCCAC
ACTGGATAGAGGACGAGAATGAATATAGAGCTCTTTTAAAGAAGAAAGTG
CTATACGAGCCAGGAATTCCAGTGAAACCATTATTAAAATCTAATATTGT
TCAGGAAATTATGGCATCAACAAAAATATCACATTCAATTCCTTTAAAAA
CCAATGACATTCAAGAATCAATTCCTTCAACCAATGACATTCAAGAATCA
ATTCCTTTAACCAATGACATTCAAGAATCAATTCCTTCAACCAATGACAT
TCAAGAATCAATTCCTTACAATGACATTCAAGAGCCAGATCCAGCCGAAC
CAGCCGAAGACTTTGAAACGTGCTTAGGAAAGTATGAAAAGTACTTGTTA
AGCATTTCTGGTGGGAGAAAGTCAGTTAAAAATGCTTTTGACGAGAAATC
CCAAATAAGGACATTGGCTAAACTTTGTTCGAATGGTGAACCACTCAGCT
ATCGCAATGTACTCAATTTAAAGCTGGTGCAAGACGAGTACGTCTTCAAA
TACTCTAAAGAGAAGAAGCATACACCAGGAACAATCAAATCATACTTGCT
ATCTCTCACACACTTTATGAATTTCCTGAAACGTTCCATTGAACGACCAG
ACGCTGACAACATCGTTGTTGTTGATACCGATAAATTCCCAACTGAGAAG
CTGCTTGTTTTGatttctttcGATGAGTTAAAGCAAGCGATGGAGACTAA
AAATATGGAAGCTGCAAGTCTGCTCTTCAGTCAATGGAAAAAAGAAACAA
AAGGACAGCAACAACATGAGGCAGCTGGGAAAATTGAAATAGGCAAAAAA
GGAGCCACGACAAGCGACAGGAAGAGATGGCCATGTCCTGAATGTGGGAA
TACGCCCATTAATCTCGCCAGACATCTATCTACTGTCCACAAAGATTTAG
GCTGGACAAATAAAAAAGCTGACAGGTATAAAAGAGAGAACAACATGCGG
AAGGTCAGGAAGGATAAATTGCCAACAACAACTCGGAGGGTAGTTAGGCA
TATTTGCCCACTTTGCGACAAGCCAGTCGATCGCATTCACGACCACCTTA
AAAAATCCCCACACTGGATAGAGGACGAGAATGAATATAGAGCTCTTTTA
AAGAAGAAAGTGCTATACGAGCCAGGAATTCCAGTGAAACCATTATTAAA
ATCTAATATTGTTCAGGAAATTATGGCATCAACAAAAATATCACATTCAA
TTCCTTTAAAAACCAATGACATTCAAGAATCAATTCCTTCAACCAATGAC
ATTCAAGAATCAATTCCTTTAACCAATGACATTCAAGAATCAATTCCTTC
AACCAATGACATTCAAGAATCAATTCCTTACAATGACATTCAAGAGCCAG
ATCCAGCCGAACCAGCCGAAGACTTTGAAACGTGCTTAGGAAAGTATGAA
AAGTACTTGTTAAGCATTTCTGGTGGGAGAAAGTCAGTTAAAAATGCTTT
TGACGAGAAATCCCAAATAAGGACATTGGCTAAACTTTGTTCGAATGGTG
AACCACTCAGCTATCGCAATGTACTCAATTTAAAGCTGGTGCAAGACGAG
TACGTCTTCAAATACTCTAAAGAGAAGAAGCATACACCAGGAACAATCAA
ATCATACTTGCTATCTCTCACACACTTTATGAATTTCCTGAAACGTTCCA
TTGAACGACCAGACGCTGACAACATCGTTGTTGTTGATACCGATAAATTC
CCAACTGAGAAGCTGCTTGTTTTGatttctttcGATGAGTTAAAGCAAGC
GATGGAGACTAAAAATATGGAAGCTGCAAGTCTGCTCTTCAGTCAATGGA
AAAAAGAAACAAAAGGACAGCAACAACATGAGGCAGCTGGGAAAATTGAA
ATAGGCAAAAAAGGAGCCACGACAAGCGACAGGAAGAGATGGCCATGTCC
TGAATGTGGGAATACGCCCATTAATCTCGCCAGACATCTATCTACTGTCC
ACAAAGATTTAGGCTGGACAAATAAAAAAGCTGACAGGTATAAAAGAGAG
AACAACATGCGGAAGGTCAGGAAGGATAAATTGCCAACAACAACTCGGAG
GGTAGTTAGGCATATTTGCCCACTTTGCGACAAGCCAGTCGATCGCATTC
ACGACCACCTTAAAAAATCCCCACACTGGATAGAGGACGAGAATGAATAT
AGAGCTCTTTTAAAGAAGAAAGTGCTATACGAGCCAGGAATTCCAGTGAA
ACCATTATTAAAATCTAATATTGTTCAGGAAATTATGGCATCAACAAAAA
TATCACATTCAATTCCTTTAAAAACCAATGACATTCAAGAATCAATTCCT
TCAACCAATGACATTCAAGAATCAATTCCTTTAACCAATGACATTCAAGA
ATCAATTCCTTCAACCAATGACATTCAAGAATCAATTCCTTACAATGACA
TTCAAGAGCCAGATCCAGCCGAACCAGCCGAAGACTTTGAAACGTGCTTA
GGAAAGTATGAAAAGTACTTGTTAAGCATTTCTGGTGGGAGAAAGTCAGT
TAAAAATGCTTTTGACGAGAAATCCCAAATAAGGACATTGGCTAAACTTT
GTTCGAATGGTGAACCACTCAGCTATCGCAATGTACTCAATTTAAAGCTG
GTGCAAGACGAGTACGTCTTCAAATACTCTAAAGAGAAGAAGCATACACC
AGGAACAATCAAATCATACTTGCTATCTCTCACACACTTTATGAATTTCC
TGAAACGTTCCATTGAACGACCAGACGCTGACAACATCGTTGTTGTTGAT
ACCGATAAATTCCCAACTGAGAAGCTGCTTGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043337-exon-sc0004128-1491911889:868..928 | TCONS_00043337-exon-sc0004128-1491911889:868..928 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1510915933:868..928 | TCONS_00043337-exon-sc0004128-1510915933:868..928 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1575043694:868..928 | TCONS_00043337-exon-sc0004128-1575043694:868..928 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1491911889:1137..1339 | TCONS_00043337-exon-sc0004128-1491911889:1137..1339 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1510915933:1137..1339 | TCONS_00043337-exon-sc0004128-1510915933:1137..1339 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1575043694:1137..1339 | TCONS_00043337-exon-sc0004128-1575043694:1137..1339 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1491911889:1979..2779 | TCONS_00043337-exon-sc0004128-1491911889:1979..2779 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1510915933:1979..2779 | TCONS_00043337-exon-sc0004128-1510915933:1979..2779 | Clytia hemisphaerica | exon |
| TCONS_00043337-exon-sc0004128-1575043694:1979..2779 | TCONS_00043337-exon-sc0004128-1575043694:1979..2779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004128 | supercontig | sc0004128:868..2779 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
Blast
The following BLAST results are available for this feature:
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