TCONS_00043335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043335
Unique NameTCONS_00043335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043335 ID=TCONS_00043335|Name=TCONS_00043335|organism=Clytia hemisphaerica|type=transcript|length=534bp
gtattttagcattttaacggaaaatgttaaatatttgcTCGATTCTGGAC
CCTGAAAAGGTTTTGAACATCAAATAAGGTATCATTAATGTTTGATACAC
AATTGAACAGAACTTCATGAGGTTATTTTATGTTCCTAGGTCTTGAAATG
AgctgaatttagcaaaaattagaCAAGGTGCAAAGTTAATTTTAGTAAGA
GAAGCAGAATAAATTGCAGTATTTCCAGtggaaaatgctaaatttagctc
caaacgGGCGGCCCTTTAACAGCTCAAATGTTTTATTGGTGTTAATAACT
TGATTATTAAACTACTTCAAAGGAAGTTATGTCTTATACCCAATCAAGCC
TTTTACTTTGGTGTTTTGGCACATATTGTCTTTGGGGAAATAGGTGCTAA
AAAAGTGCTCTATAAAGGGCCCCACAATAGGAAAATGTGGGGCTTTTAAC
AAAGGCTGCTTTAGTTGCCATCCCTCTATGAGAATCATTGGTCAGATAGA
CAACTTCCTGGGTATTTAGATCATTTTCCGAAAC
Run BLAST on NCBI

transcript from alignment at sc0004127:31..564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043335 ID=TCONS_00043335|Name=TCONS_00043335|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at sc0004127:31..564 (Clytia hemisphaerica)
GTTTCGGAAAATGATCTAAATACCCAGGAAGTTGTCTATCTGACCAATGA
TTCTCATAGAGGGATGGCAACTAAAGCAGCCTTTGTTAAAAGCCCCACAT
TTTCCTATTGTGGGGCCCTTTATAGAGCACTTTTTTAGCACCTATTTCCC
CAAAGACAATATGTGCCAAAACACCAAAGTAAAAGGCTTGATTGGGTATA
AGACATAACTTCCTTTGAAGTAGTTTAATAATCAAGTTATTAACACCAAT
AAAACATTTGAGCTGTTAAAGGGCCGCCcgtttggagctaaatttagcat
tttccaCTGGAAATACTGCAATTTATTCTGCTTCTCTTACTAAAATTAAC
TTTGCACCTTGtctaatttttgctaaattcagcTCATTTCAAGACCTAGG
AACATAAAATAACCTCATGAAGTTCTGTTCAATTGTGTATCAAACATTAA
TGATACCTTATTTGATGTTCAAAACCTTTTCAGGGTCCAGAATCGAgcaa
atatttaacattttccgttaaaatgctaaaatac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027040XLOC_027040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043335-exon-sc0004127-1491911889:31..564TCONS_00043335-exon-sc0004127-1491911889:31..564Clytia hemisphaericaexon
TCONS_00043335-exon-sc0004127-1510915933:31..564TCONS_00043335-exon-sc0004127-1510915933:31..564Clytia hemisphaericaexon
TCONS_00043335-exon-sc0004127-1575043694:31..564TCONS_00043335-exon-sc0004127-1575043694:31..564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004127supercontigsc0004127:31..564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.957733	1.16588	2.95047	2.64267	0.353738	0.130379	0.420984	0.342102	0.104238	0	0.358753	0	0.17764	0.0906972	0.13644	0	0	0	0.170439	0.429106	0.956545	1.14104	0.527053	0.169145	0	0.226006	1.87751	1.70512	0.510064	1.18586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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