TCONS_00043327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043327
Unique NameTCONS_00043327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043327 ID=TCONS_00043327|Name=TCONS_00043327|organism=Clytia hemisphaerica|type=transcript|length=110bp
AAAACTACTACTGTCATCACATcaaaGTGGACAATGAACGAAGTGTGTTC
CTTAGCAACTTATTGTTCAGCGTTGACGACCAAGCTATCCGTCAAATGTT
CAACCATGTG
Run BLAST on NCBI

transcript from alignment at sc0004125:3044..3273-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043327 ID=TCONS_00043327|Name=TCONS_00043327|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at sc0004125:3044..3273- (Clytia hemisphaerica)
AAAACTACTACTGTCATCACATGTAAGAATGCAATTATTTTTTTTTCATG
TGAAAACGTTTAAGAAAATACTGGTTTTGAAGAATGGTATATCCAAACTT
ATGATTTCTGCTTATGATTCCTGCACCCTTTTTATTTTTCAGCAAAGTGG
ACAATGAACGAAGTGTGTTCCTTAGCAACTTATTGTTCAGCGTTGACGAC
CAAGCTATCCGTCAAATGTTCAACCATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027034XLOC_027034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043327-exon-sc0004125-1575043694:3252..3273TCONS_00043327-exon-sc0004125-1575043694:3252..3273Clytia hemisphaericaexon
TCONS_00043327-exon-sc0004125-1575043694:3044..3131TCONS_00043327-exon-sc0004125-1575043694:3044..3131Clytia hemisphaericaexon
TCONS_00043327-exon-sc0004125-1510915933:3252..3273TCONS_00043327-exon-sc0004125-1510915933:3252..3273Clytia hemisphaericaexon
TCONS_00043327-exon-sc0004125-1510915933:3044..3131TCONS_00043327-exon-sc0004125-1510915933:3044..3131Clytia hemisphaericaexon
TCONS_00043327-exon-sc0004125-1491911889:3252..3273TCONS_00043327-exon-sc0004125-1491911889:3252..3273Clytia hemisphaericaexon
TCONS_00043327-exon-sc0004125-1491911889:3044..3131TCONS_00043327-exon-sc0004125-1491911889:3044..3131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004125supercontigsc0004125:3044..3273 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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