TCONS_00043299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043299
Unique NameTCONS_00043299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043299 ID=TCONS_00043299|Name=TCONS_00043299|organism=Clytia hemisphaerica|type=transcript|length=396bp
NNGACGAGCAACACATCATTGATAAAGTGATGGAGGAGTACCGTATTGAC
GTCCGCCCGCAAATCAAAGCACACTCACCGGTCAAAGTAAAATTTGACGT
TCGAATGAAAGGTCTTAATTCCTTGGTATGAATGAtttgaatgatttttc
gaagtccCTTGACTCTTTTAACTCTGttgacaaaaatcaaaattgagtTG
TTTGGTTACAATGCTTCTCATCTTCTTATCTCGTCAGCATATGCCCTATT
TGAACTTCTTGAATTTGGGCTTCAAAAGGTTTCTGAAAGATGGGTATTTG
AATTAAATGGATTTCGGTGGATACTCCACCGCTGTATTAGACAAGTTATT
ATAAGTGCTTATCAGTGGAACAGGGGCGTTATCAGCGAAACAGGGG
Run BLAST on NCBI

transcript from alignment at sc0004105:180..575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043299 ID=TCONS_00043299|Name=TCONS_00043299|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0004105:180..575 (Clytia hemisphaerica)
CCCCTGTTTCGCTGATAACGCCCCTGTTCCACTGATAAGCACTTATAATA
ACTTGTCTAATACAGCGGTGGAGTATCCACCGAAATCCATTTAATTCAAA
TACCCATCTTTCAGAAACCTTTTGAAGCCCAAATTCAAGAAGTTCAAATA
GGGCATATGCTGACGAGATAAGAAGATGAGAAGCATTGTAACCAAACAac
tcaattttgatttttgtcaaCAGAGTTAAAAGAGTCAAGggacttcgaaa
aatcattcaaaTCATTCATACCAAGGAATTAAGACCTTTCATTCGAACGT
CAAATTTTACTTTGACCGGTGAGTGTGCTTTGATTTGCGGGCGGACGTCA
ATACGGTACTCCTCCATCACTTTATCAATGATGTGTTGCTCGTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027007XLOC_027007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043299-exon-sc0004105-1491911889:180..575TCONS_00043299-exon-sc0004105-1491911889:180..575Clytia hemisphaericaexon
TCONS_00043299-exon-sc0004105-1510915933:180..575TCONS_00043299-exon-sc0004105-1510915933:180..575Clytia hemisphaericaexon
TCONS_00043299-exon-sc0004105-1575043694:180..575TCONS_00043299-exon-sc0004105-1575043694:180..575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004105supercontigsc0004105:180..575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189721	0	0.859245	0.210159	0.767546	0.808701	0.243916	0	40.1283	38.4177	15.5692	28.5557	1.00942	1.83451	0.861837	1.04049	3.56056	5.10925	2.82348	3.58769	0.73373	0.805248	0	0.197766	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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