TCONS_00043294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043294
Unique NameTCONS_00043294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043294 ID=TCONS_00043294|Name=TCONS_00043294|organism=Clytia hemisphaerica|type=transcript|length=330bp
TAGGTGTATTACCGAAGTTGTACGAATGTGCATTTTGTCATCAAATCATT
CGAAGGTTTACCGAGCTACCATGTGGTCATGGCTTTTGTGAAAAATGTCT
TGATAAATGGGAAAAGAAGAAACAAGATGAAAATGAGAACGCTGTGCTGA
GATGTATAGTTTGCAACCAAGTATACCCTGTAGATAAGGTTAGTCAATTC
TCTATTTGTAACTactagtacggtattacgggatttgacgaaaaaaagga
cgggaaaacggtattttaaaatcagacggtgacggtatttggccttattt
tttgtcattatgccggtatttgaacccgTA
Run BLAST on NCBI

transcript from alignment at sc0004098:7356..7995-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043294 ID=TCONS_00043294|Name=TCONS_00043294|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0004098:7356..7995- (Clytia hemisphaerica)
TAGGTGTATTACCGAAGTTGTACGAATGTGCATTTTGTCATCAAATCATT
CGAAGGTTTACCGAGCTACCATGTGGTCATGGCTTTTGTGAAAAATGTCT
TGATAAATGGGAAAAGAAGAAACAAGATGAAAATGAGTAGAAGACCAAAT
ACACGTTTTTTTTATAAGAACATCCAAAATTTTTGAAGCCTCCGGATATT
CTTAACTTTTTATTTTGACCATTTTATGATTTTTTTTGACCATTTTCCTA
AGAAATAGGGTGTTTTTGAATCCACAAAGCCTTGAAATGTTCTTAACTTG
TTCTTAACATTTTGGCTAGCCAAGCCTTATGCATTTTAACCCTAACCAAT
GGAGAACTACCTTTAAATTGAAGCAAAAACTTTTCGGTTTCCTGTATTTC
TTTTTTGTGAAGCTTTATTATAGTTTCCTCCTTCCTGGTTATTTAGGAAC
GCTGTGCTGAGATGTATAGTTTGCAACCAAGTATACCCTGTAGATAAGGT
TAGTCAATTCTCTATTTGTAACTACTAGTACGGTATTACGGGATTTGACG
AAAAAAAGGACGGGAAAACGGTATTTTAAAATCAGACGGTGACGGTATTT
GGCCTTATTTTTTGTCATTATGCCGGTATTTGAACCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027003XLOC_027003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043294-exon-sc0004098-1575043694:7860..7995TCONS_00043294-exon-sc0004098-1575043694:7860..7995Clytia hemisphaericaexon
TCONS_00043294-exon-sc0004098-1575043694:7356..7549TCONS_00043294-exon-sc0004098-1575043694:7356..7549Clytia hemisphaericaexon
TCONS_00043294-exon-sc0004098-1510915933:7860..7995TCONS_00043294-exon-sc0004098-1510915933:7860..7995Clytia hemisphaericaexon
TCONS_00043294-exon-sc0004098-1510915933:7356..7549TCONS_00043294-exon-sc0004098-1510915933:7356..7549Clytia hemisphaericaexon
TCONS_00043294-exon-sc0004098-1491911889:7860..7995TCONS_00043294-exon-sc0004098-1491911889:7860..7995Clytia hemisphaericaexon
TCONS_00043294-exon-sc0004098-1491911889:7356..7549TCONS_00043294-exon-sc0004098-1491911889:7356..7549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004098supercontigsc0004098:7356..7995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738497	0.706238	0	0.0419359	0	0.695659	0	0	1.31686	0.626054	0.47425	0.160332	3.21731	1.80449	3.34153	5.49998	0.665354	1.72816	4.60472	4.3206	1.3827	0.223275	0	1.5839	1.63801	0	0	0.107169	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top