TCONS_00043292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043292
Unique NameTCONS_00043292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043292 ID=TCONS_00043292|Name=TCONS_00043292|organism=Clytia hemisphaerica|type=transcript|length=387bp
NTTTAGCATGCACCGTAATGGACAATGATTTTGGTCACGTGCTTCCGACA
CAGGATACAAGCTGCACAAACATTGCTTCAAGTCTCGCTGGATTGACGGG
ACGTCATTTGTTGGTGTACCCATTATGTCGACAAACACCGGTCCATTATT
TGACCGATCTCTTGAAAGGAGCTTGTATGACTGGTAagtctttttcgttt
tttattatcctatggggggggggcttattaagattttcttcttttgatct
cAAAGATCGTTTcggattttcacaaaaaaacaatatattATGAACTTTCT
GATTTCGCtccaaaaatgactgttgatGCCATACTCTATCAAAGCTGATA
ACAGATTCTAAAATTCAGAGATAATTGTTTCAAGGCT
Run BLAST on NCBI

transcript from alignment at sc0004098:2328..4262-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043292 ID=TCONS_00043292|Name=TCONS_00043292|organism=Clytia hemisphaerica|type=transcript|length=1935bp|location=Sequence derived from alignment at sc0004098:2328..4262- (Clytia hemisphaerica)
NTTTAGCATGCACCGTAATGGACAATGATTTTGGTCACGTGCTTCCGACA
CAGGTATGTGATTTGATCTTTAAAAAGGCCTAGCATTACTTACACTTTTG
TCGAAATGTCTTACATTGCAAGTTTCGGACTTCCTGGTGTAAGTAAATAA
ACAAGTTGAGGGGTGGGGTTGGAAAAAATCTTTTAATTACATTAAACAGA
GGGGGCTCAGAAATTCGTAAACCTGGGGATCCAAATAAGGTCCGACATGT
ATTCCCAAAAATGACCGGGTGCACGAGGGTAAGACAGCTCTTGAAAGGGC
AGAAGCGAGCTCAAAAACCTGGATTCTTGCGTAAATGCTAATGGCCGATA
TGAGAGAAGGAGCTCTAAATTAATGACGAAAAATCTTTTTCTTTTATCAC
CGTACAACTTAAACATCAGCTAGACACTCCGTTATTAATCTAAAACTTTA
AACTATCAAACGCATTCCGTTACTTTTTAGGATACAAGCTGCACAAACAT
TGCTTCAAGTCTCGGTGGATTGACGGGACGTCATTTGTTGGTGTACCCAT
TATGTCGACAAACACCGGTCCATTATTTGACCGATCTCTTGAAAGGAGCT
TGTATGACTGGTGAGTCTTTTTGGAACTACCTCAGGGTACCCCGTTGGAG
GTCCTTTAAATTAACCCATGTCCGTCCGTTCGTTCGTTCGTTCGTCCGTT
CGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGGGGGGGTTGGAAAAAATCTTTTAATTA
CATTAAACAGAGGGGGCTCAGAAATTCGTAAACCTGGGGATCCAAATAAG
GTCCGACATGTATTCCCAAAAAATGACCGGGTGCACGAGGGTAAGACAGC
TCTTAAAAGGGCAGAGACGAGCTCAAAAATCTAGATTCTTGCGTAAATGC
CGATATGAGAGAAGGAGCTCTAAATTAATGACGAAAATTTTTTTCTTTGA
TCGTCAGCATCACATCAGCTACACTCTCCGTTATTAATCTAAAACCTTTA
AACTATCAAACGCATTCCATTACTTTTTAGGATACAGNAGCTAGACACTC
CGTTATTAATCTAAAACTTTAAACTATCAAACGCATTCCGTTACTTTTTA
GGATACAAGCTGCACAAACATTGCTTCAAGTCTCGCTGGATTGACGGGAC
GTCATTTGTTGGTGTACCCATTATGTCGACAAACACCGGTCCATTATTTG
ACCGATCTCTTGAAAGGAGCTTGTATGACTGGTAAGTCTTTTTCGTTTTT
TATTATCCTATGGGGGGGGGGCTTATTAAGATTTTCTTCTTTTGATCTCA
AAGATCGTTTCGGATTTTCACAAAAAAACAATATATTATGAACTTTCTGA
TTTCGCTCCAAAAATGACTGTTGATGCCATACTCTATCAAAGCTGATAAC
AGATTCTAAAATTCAGAGATAATTGTTTCAAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027002XLOC_027002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043292-exon-sc0004098-1575043694:4210..4262TCONS_00043292-exon-sc0004098-1575043694:4210..4262Clytia hemisphaericaexon
TCONS_00043292-exon-sc0004098-1575043694:2328..2661TCONS_00043292-exon-sc0004098-1575043694:2328..2661Clytia hemisphaericaexon
TCONS_00043292-exon-sc0004098-1510915933:4210..4262TCONS_00043292-exon-sc0004098-1510915933:4210..4262Clytia hemisphaericaexon
TCONS_00043292-exon-sc0004098-1510915933:2328..2661TCONS_00043292-exon-sc0004098-1510915933:2328..2661Clytia hemisphaericaexon
TCONS_00043292-exon-sc0004098-1491911889:4210..4262TCONS_00043292-exon-sc0004098-1491911889:4210..4262Clytia hemisphaericaexon
TCONS_00043292-exon-sc0004098-1491911889:2328..2661TCONS_00043292-exon-sc0004098-1491911889:2328..2661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004098supercontigsc0004098:2328..4262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398626	0.583085	2.03105	0.662356	0.268785	0	0	0	0.671829	0.832169	1.00965	1.5929	0.662785	0.963632	0.113177	0.242912	0	0.153359	0.211874	0.443422	0	0.563975	0.228529	0.207766	0	0.190984	0.273298	0.291671	0.221222	0.22539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top