TCONS_00043250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043250
Unique NameTCONS_00043250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043250 ID=TCONS_00043250|Name=TCONS_00043250|organism=Clytia hemisphaerica|type=transcript|length=459bp
GTGCACTGGCGGCGCAGTGGCGCACATGCTGCTTACAAAGATTGATAAAG
TTTCAGTCGGCGTAAAAGAAATTATTCATGTCAGCGTCAATTACTTCATA
ATCTATCGCGTTTTGACTTTTGTTCCCCTTCCACGTCCGCTTCCGCTCGC
TCCTGCCactttttccaaacatttttgcGCGCATGCGTGCCTCCCTCTCC
TTAAACCCTTACCGAAAAACTCAATATTGGTACAGCCCAGANATTTTTGC
GCGCATGCGTGCCTCCCTCTCCTTAAACCCTTACCGAAAAACTCAATATT
GGTACAGCCCAGAATTACCCTTGGCGCAAGGCTTACTCTTTCGAAAATTA
TCTTCGGCGCAAAATTTCATGGAATCCATACTGACTAAAGTAAAATTGAG
ATTCAAAATAACCTTGAAAAATTCAATTAGATTgttaaatttgataaatt
tatcTTCCT
Run BLAST on NCBI

transcript from alignment at sc0004063:8186..8644

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043250 ID=TCONS_00043250|Name=TCONS_00043250|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0004063:8186..8644 (Clytia hemisphaerica)
AGGAAgataaatttatcaaatttaacAATCTAATTGAATTTTTCAAGGTT
ATTTTGAATCTCAATTTTACTTTAGTCAGTATGGATTCCATGAAATTTTG
CGCCGAAGATAATTTTCGAAAGAGTAAGCCTTGCGCCAAGGGTAATTCTG
GGCTGTACCAATATTGAGTTTTTCGGTAAGGGTTTAAGGAGAGGGAGGCA
CGCATGCGCGCAAAAATNTCTGGGCTGTACCAATATTGAGTTTTTCGGTA
AGGGTTTAAGGAGAGGGAGGCACGCATGCGCgcaaaaatgtttggaaaaa
gtGGCAGGAGCGAGCGGAAGCGGACGTGGAAGGGGAACAAAAGTCAAAAC
GCGATAGATTATGAAGTAATTGACGCTGACATGAATAATTTCTTTTACGC
CGACTGAAACTTTATCAATCTTTGTAAGCAGCATGTGCGCCACTGCGCCG
CCAGTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026963XLOC_026963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043250-exon-sc0004063-1491911889:8186..8644TCONS_00043250-exon-sc0004063-1491911889:8186..8644Clytia hemisphaericaexon
TCONS_00043250-exon-sc0004063-1510915933:8186..8644TCONS_00043250-exon-sc0004063-1510915933:8186..8644Clytia hemisphaericaexon
TCONS_00043250-exon-sc0004063-1575043694:8186..8644TCONS_00043250-exon-sc0004063-1575043694:8186..8644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004063supercontigsc0004063:8186..8644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.160679	0.157199	0	0	0	0	0	0	0.28755	0	1.03819	1.07817	0.402909	0.25943	2.23717	1.52869	0	0.315717	0.137208	0	0.162712	0	0.304727	0	0.389176	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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