TCONS_00043235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043235
Unique NameTCONS_00043235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043235 ID=TCONS_00043235|Name=TCONS_00043235|organism=Clytia hemisphaerica|type=transcript|length=1412bp
CTTTTTTAGGGACAAATTGAACTTTTGAAGAGTGGGTCTAAGCTGATCTA
TCGGTTCAAAGACAGCCAATCATCCAGtAAAACACGAGGTTTCGATGTTG
AAGAAAAACTGATTTATCAAATcatagaaaatgctgaaaacaAAGGGGTA
TGGATTCGAGACATCAGGTACAAGTCGAATCTACAGATGACAGCTGTCAA
CAAAGTATTGAAAAATCTGGAGAGTAAAAAACTGATCAAGGCCGTCAACT
CCGTTGCGGCTGGTAAACGCAAAGTATATATGTTGTTCAATTTGGAACCC
GATGCATCGGTGACGGGAGGTGCTTGGTATAGTGATCAAGATTTCGAAGC
TGAGTTTGTTGATATTCTCAATCAGCAATGTTTCAAATTCTTACAACAAA
AGGCTGCGCAAGCACAAGAAATGAAAGTGGACCCGCTGTTAAAAAGAAAT
CGTTCTTATGCTTCCTCTCATGAAGTATGGAAATTTATCGCTGAGCTTGG
CATCAGTAAGgtatCACTAAGCGTCCAAGATATTGAAACCATTCTCAACA
CCTTAATTTTTGACGGCAAAGCAGAGATGATCATTATTACAGATGTGTCA
TCTACAGGATCATCCTCAACCAGTCACGAATCTAATGCagtacaaaagaa
attatttagAGCTGTCAAACCTGTTGTTCCTGTACNATGCagtacaaaag
aaattatttagAGCTGTCAAACCTGTTGTTCCTGTACCTGGTCTCATGCG
TGTACCTTGTGGTGTCTGTCCTgtTGCCAAGAATTGTTATCCAGGAGGTG
CAGTCTCACCACAGACATGTATATACCTTAAAGATTGGTTGGATTGAGTT
GTTGGGCACAATTGTGTTGTTAAACAATTCATGCACGAAGGGTGTACTAC
GAATTACGTAATTCCATTGGCTAATCGCTTCTCCCAAGCAAGTGCTCCCA
CGCCCCGCGGTGGTTTATTTCATGACTCATGGAAGACCATTTATGTTGAG
GAAATGGTGCTGTGGTGTTTAGTTAAAGCTCTGTACAGAGTTGTAGATAT
TTTCGATAAGTTTAACTTATCTGTGCTCCATAGGAATATCGAACATATAT
TTTCCTCCGATGTTATGAATTTCTCAAAGAGACGGATGTTAAACAGATGT
TCTAAACACTCTGATAAAATTTTACCAGAATGTGATGATGGGTTTAATGA
TGCGACGTTGTAATTATTATTTGGGAaaattgatttatgatttattgtcT
CAGGATATTTGATTTACTTTGGAAAGATACGGCAATTTTTCAGATAGAAA
TAGGACTTTAGCCAAAACACgagtaaaatgaaattaatcgaaagtttgat
tttcaaatgttcatGTGGCCTGAATTTTGCTTCAAATCCCTTCAAATTGA
TTACCAATTGAC
Run BLAST on NCBI

transcript from alignment at sc0004048:3340..8546+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043235 ID=TCONS_00043235|Name=TCONS_00043235|organism=Clytia hemisphaerica|type=transcript|length=5207bp|location=Sequence derived from alignment at sc0004048:3340..8546+ (Clytia hemisphaerica)
CTTTTTTAGGGACAAATTGAACTTTTGAAGAGTGGGTCTAAGCTGATCTA
TCGGTTCAAAGACAGCCAATCATCCAGGTTAGAAGCTGTTTccttatttt
gttttgtttctcaAGTAAACTGTTTTGTCACACAGGGCTTATCCTTAGCC
TTAGAGTGAGTATCACGAGACAATAAAAGTTGTGAAAAAATGAAGTACTC
GATCTGTCGTGGTTCAGGAGGTAATCTTAAGATTGCCTTAAGATTTAAAT
TGTGTGAATTGGATCCAAACATGAGACTGAAATATCCACTCAACAGCACC
CATGCATTTTTAAAGGTAAAACAAATAAGTTgtgttttctatttttctgg
TAGCTTCCCATAAAAGTCACAGACCTGACCCTTTGTCaagaatctttttt
catttatagtAAAACACGAGGTTTCGATGTTGAAGAAAAACTGATTTATC
AAATcatagaaaatgctgaaaacaAAGGTACAGTTAATAAagctaccggg
tgcaccaaaaaaaagtatacaggtttgtcgagatattgtgagcttcagga
tttaaattttttgttcattctctTTTTATCAtaaagaggatgctctaact
tgaattttgagctatcatactttaaatttgaaaaagtagttcaaatgtta
ttttaaaaaaactgactttttttccatgtccaaatttcaaaaaatcatta
aaaacagcaatcacgctataaataagacaaaatggcaaaatgttacattt
tattcttatttatattttgccaacagtttctccatcttatttgcTTGTcc
tgaacatttccaacacgagcaaactcaatgcagacccaagttctatgagc
aactagtcgaggaatggtgatatattttttttaaagttttctcacatagc
acatacataacatcaaaacctctcttggagattttttgtcagcttttcca
aaaatattatcccacatgggaatagcttgctttaccatatttttaaattc
tgtaatgagttttgatgaacatagttgcattttttggtaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNggtaagtgtcaagagaaaagtttgctcgctgttt
ttgatgattttttgaaatttcgacattatataaaaaaaagtgagtttttt
ttaaataactttcaaactactttttcaaacctaatgtatgatagctcaaa
attcaagttagagcatcctctatacgataaaaaaagaatgaacaaagaaa
tttaaatcctgaagatcacaatatctcgacaaacctgtatactttttttt
ggtgcacccggtatattaaAAACTCTGCCTGACGttatattgaaaaataa
taaaaacttaTATTAAAGACTGATAGCAcgaaaaagaaaaccaaaaattg
TTGACATGATTATAGGTATCAGAGGATCTGCGTTGTATTTGATAGACTTG
CGAACGAAAAATTAACTATGACGAATTCTAGATTTAGGCCGGTACCCTGC
TGAGAATTGCAAGCCCAGCGTTTTTATTAGCTTGAATATGTACTTTAGGC
GACGAAACCGAATTTTTGGACCGGCGAATTGTAAATCTTTTCGTGCCTGG
GACAGGCAGAATTCGCTGTTTGCCGGGCCTAAATAGGACTGATACTCCCA
TTCTCTTGAGGGAAAGTAAGTGTTTCTGAGTGTTTTcttaataatttttt
atctagGGGTATGGATTCGAGACATCAGGTACAAGTCGAATCTACAGATG
ACAGCTGTCAACAAAGTATTGAAAAATCTGGAGAGTAAAAAACTGATCAA
GGCCGTCAACTCCGTTGCGGTATGATAATgattatgaaaatatttgaatt
tctaGCCTGATTTTTTAAAATGATCCCTTTAACAAAGGATAACAAATTTC
AACATAGTGAAAAGTTTTAGCATTTTCTTCTATAAGTAAGTTTGATATAA
GACATAGGTTCTTATCAAACatacaattatttttaaatagctAGATAATA
TTTCACAGCCAGCTGAATCGAACAGTGGATACAATATTACATCTGGTGGT
GTATAATAACAATTATAATATCGTATTCTCTCTTTATTAGGCTGGTAAAC
GCAAAGTATATATGTTGTTCAATTTGGAACCCGATGCATCGGTGACGGGA
GGTGCTTGGTATAGTGATCAAGATTTCGAAGCTGAGTTTGTTGATATTCT
CAATCAGCAATGTTTCAAATTCTTACAACAAAAGGTGCATTTTTTTNCGA
GTTTGTTGACATTCTCAATCAGCAATGTTTCAAATTCTTACAACAAAAGG
TGCATTTTttttacagttgactctcgctaattcgaattgAAACTGGGAAT
CTTATTGGTTCGATTTGcaggatttcgaaaaaattatttatctaGCTaca
ttaagggaacttattttgacgagtttggcaagtttagaaatttCAACGAA
AtcagttctcgccaaaattataTATCTTACTCGCCAAAATAACCCCTAAA
ATTCATCAATATTgctcaaaataagcaaaaatagaacagatttagcctgt
cactcgccaaaattagttctcactaatattaaatattttcaaggtTTCTG
TTACTCGCAAAAaatagttctcgccaaaataaattcccttATTGTACGAT
GGATAAAATCTGCAATCTGATTAGATTTATCTGCTTATACCACGCTCGTG
TGGCGAATGTTACGATCTGAGCTGGTTATTTAGTCAAAACATTCAACAAA
ATTCGTAAACTCGCTTCTTAGTTTAGAGTTGAGTCCAGGTAATACCATGT
TATTGAGGATAGTGGGAGTATCTTCAGTATTCTTATCTCCATTGTAGGCT
GCGCAAGCACAAGAAATGAAAGTGGACCCGCTGTTAAAAAGAAATCGTTC
TTATGCTTCCTCTCATGAAGTATGGAAATTTATCGCTGAGCTTGGCATCA
GTAAGGTAACACAAATTCTTCCCAGATTTATTTGTCGTCTGAGACTTGCT
CTACCTACTGATCTTTGTAAACCCTGGACTAAGCTTTATCCACGGTCTTT
GATGGTACGCTAGTAGTAGCATTACTTTGTTCAACTTTTCAATTCAACGA
ATTTTGCGGTTTGAACTGTTTTGTCCCACATTGCATAACCATTGTCTTTA
CAGCGTCTCATGGGACCTGTCTGAAAACTTCACAAATGAAATGGTCAGAT
CTGACTGAAATTTTGAATACCTCCTCTTCTTATCACGTTGTCACGTCTCT
TATCACCttttctttaaaagattttgatgttttttccaaggttcatttaa
aatgaaaagaacATATTCCAAAGTACAAAACCAATGACCAATGACCAAAG
CTCACTGATGCTTATGATGTACTTATTTCCACCGAATACAGGTCTTATTA
TGTTAATAAATGTTTTgcttatgaaaaatattttgcttatgaaaaaattt
ttttccaggtatCACTAAGCGTCCAAGATATTGAAACCATTCTCAACACC
TTAATTTTTGACGGCAAAGCAGAGATGATCATTATTACAGATGTGTCATC
TACAGGATCATCCTCAACCAGTCACGAATCTAATGCagtacaaaagaaat
tatttagAGCTGTCAAACCTGTTGTTCCTGTACNATGCagtacaaaagaa
attatttagAGCTGTCAAACCTGTTGTTCCTGTACCTGGTCTCATGCGTG
TACCTTGTGGTGTCTGTCCTGTAAGTTAATTATTTACAGTAGCAAGGAAG
TGGAGAAAGTGTCTACTTCGCATCatttaaaaataatgacaaattACCCC
TTCGTATTCACTCCTCTTTGTGTTTTGCGTATAATAACGACTAACagttt
ataaaatgaaaatatacgcatgcgttttaactttgttttgaaaatgaaac
aatagatgtgAAGTAGACACTTTCTCTATGTGCGCAGTGCATTTAGCCCA
CAATATAATCCAAATTCTAGCAAAGAACGTATCCAcgaaatacaagaaaa
aatctAAAGTAAAGCAGAAAAACCTGACAGCTTTTCGTTTCGCAAAATAA
TCTAAATGAAATTTAGCGTTTAGGTAAGAAAATGCCGTGAATGTCTACTG
TAGTCTATTACACTCTTTTTGTAtgtaagaacaatgaggctcaaaagtTC
AAGAAATAAGAACAATGAGCCTGGAATGGCTAACTGTTTATGCAAATTAT
TGGCAATTTGATAAAAGTAGGATATTAAATCTGAAATACCTCAGTTTCcc
gagaaatttgaaaatgataaaagcaATTTAGACTCAAATTGCCATCCTGA
GGAGTGTCAATAAAAAGTTTACTTTTATGAAAAAAGAGCGCATATCATTA
ATGACgagatttttgtattttcaaggtTGCCAAGAATTGTTATCCAGGAG
GTGCAGTCTCACCACAGACATGTATATACCTTAAAGATTGGTTGGATTGA
NtttttgtattttcaaggtTGCCAAGAATTGTTATCCAGGAGGTGCAGTC
TCACCACAGACATGTATATACCTTAAAGATTGGTTGGATTGAGTTGTTGG
GCACAATTGTGTTGTTAAACAATTCATGCACGAAGGGTGTACTACGAATT
ACGTAATTCCATTGGCTAATCGCTTCTCCCAAGCAAGTGCTCCCACGCCC
CGCGGTGGTTTATTTCATGACTCATGGAAGACCATTTATGTTGAGGAAAT
GGTGCTGTGGTGTTTAGTTAAAGCTCTGTACAGAGTTGTAGATATTTTCG
ATAAGTTTAACTTATCTGTGCTCCATAGGAATATCGAACATATATTTTCC
TCCGATGTTATGAATTTCTCAAAGAGACGGATGTTAAACAGATGTTCTAA
ACACTCTGATAAAATTTTACCAGAATGTGATGATGGGTTTAATGATGCGA
CGTTGTAATTATTATTTGGGAaaattgatttatgatttattgtcTCAGGA
TATTTGATTTACTTTGGAAAGATACGGCAATTTTTCAGATAGAAATAGGA
CTTTAGCCAAAACACgagtaaaatgaaattaatcgaaagtttgattttca
aatgttcatGTGGCCTGAATTTTGCTTCAAATCCCTTCAAATTGATTACC
AATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026949XLOC_026949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043235-exon-sc0004048-1491911889:3340..3416TCONS_00043235-exon-sc0004048-1491911889:3340..3416Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:3340..3416TCONS_00043235-exon-sc0004048-1510915933:3340..3416Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:3340..3416TCONS_00043235-exon-sc0004048-1575043694:3340..3416Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:3749..3816TCONS_00043235-exon-sc0004048-1491911889:3749..3816Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:3749..3816TCONS_00043235-exon-sc0004048-1510915933:3749..3816Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:3749..3816TCONS_00043235-exon-sc0004048-1575043694:3749..3816Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:5146..5258TCONS_00043235-exon-sc0004048-1491911889:5146..5258Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:5146..5258TCONS_00043235-exon-sc0004048-1510915933:5146..5258Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:5146..5258TCONS_00043235-exon-sc0004048-1575043694:5146..5258Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:5530..5673TCONS_00043235-exon-sc0004048-1491911889:5530..5673Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:5530..5673TCONS_00043235-exon-sc0004048-1510915933:5530..5673Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:5530..5673TCONS_00043235-exon-sc0004048-1575043694:5530..5673Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:6287..6394TCONS_00043235-exon-sc0004048-1491911889:6287..6394Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:6287..6394TCONS_00043235-exon-sc0004048-1510915933:6287..6394Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:6287..6394TCONS_00043235-exon-sc0004048-1575043694:6287..6394Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:6898..7159TCONS_00043235-exon-sc0004048-1491911889:6898..7159Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:6898..7159TCONS_00043235-exon-sc0004048-1510915933:6898..7159Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:6898..7159TCONS_00043235-exon-sc0004048-1575043694:6898..7159Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1491911889:7907..8546TCONS_00043235-exon-sc0004048-1491911889:7907..8546Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1510915933:7907..8546TCONS_00043235-exon-sc0004048-1510915933:7907..8546Clytia hemisphaericaexon
TCONS_00043235-exon-sc0004048-1575043694:7907..8546TCONS_00043235-exon-sc0004048-1575043694:7907..8546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004048supercontigsc0004048:3340..8546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2969	8.49382	4.63776	3.43292	4.25634	3.19927	3.85086	4.93177	4.92506	3.89978	2.72284	3.78465	1.84096	1.79983	3.49411	2.99642	3.93916	3.76857	1.93564	1.78115	3.39983	3.41131	9.96252	7.86926	2.62796	4.01874	1.63592	1.41573	3.92834	5.79939
Blast
[Close]
BLAST of TCONS_00043235 vs. Swiss-Prot (Human)
Match: RPC6 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.526e-86
Identity = 147/224 (65.62%), Postives = 181/224 (80.80%), Query Frame = 1 
Query:   10 GQIELLKSGSKLIYRFKDSQSSSKTRGFDVEEKLIYQIIENAENKGVWIRDIRYKSNLQMTAVNKVLKNLESKKLIKAVNSVAAGKRKVYMLFNLEPDASVTGGAWYSDQDFEAEFVDILNXXXXXXXXXXXXXXXEMKVDPLLKRNRSYASSHEVWKFIAELGISKVSLSVQDIETILNTLIFDGKAEMXXXXXXXXXXXXXXXXXXNAVQKKLFRAVKPVVP 681
            GQ++LL+S + L+YR KDSQ++ K +G D +EKL+YQIIE+A NKG+W RDIRYKSNL +T +NK+LKNLESKKLIKAV SVAA K+KVYML+NL+PD SVTGGAWYSDQDFE+EFV++LNQQCFKFLQ KA  A+E K +P+++RN S+ASSHEVWK+I ELGISKV LS++DIETILNTLI+DGK EM II     T  S           KL+RAV P++P
Sbjct:   61 GQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDG------HMKLYRAVNPIIP 278
The following BLAST results are available for this feature:
BLAST of TCONS_00043235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC62.526e-8665.63DNA-directed RNA polymerase III subunit RPC6 OS=Ho... [more]
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