TCONS_00043182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043182
Unique NameTCONS_00043182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043182 ID=TCONS_00043182|Name=TCONS_00043182|organism=Clytia hemisphaerica|type=transcript|length=908bp
AGGTTGGGCACCTTTGGTCTCAATATTTGCCACACGGATCAGTAAAGGTC
GAACAATCAAAAGTGTGATCGAAATTGCTTTCATAATCCCAAGCTTTGTC
AATTTCATTTGGTTTGTCGTTGTAGGAGGTGTGTCCATTGATATGGAAAA
TCAAGCCATTTCAATGAGACTCCATTGCGGCATGAACAAAACAACACGTG
ATGCTTTAGGAGCTCCTGATTGGCTACACAGTCTCGGTTGTATTGATGAA
GACAAACGATTCTATATGTTTCGATTCAGCTGCTCTCGTCATGGGCACCA
TCTCCAGTAACGGTCTAGAAGAGCCACCATTGATTCAACGTATTTTCTGG
TGCATCACCATAGCTGCTTGTACTTCAGCTCTTATTGTTTATACTGAATT
CACTGATCGTGCTGACGTCAATGCTTTTGCTATTCTGGCTGGCCTTCCGT
TCGCAGTTTTGATGTGTTTCTGTGCTATTTCACTGTGGCGATTATTGAAA
ATGGAACCATATTGGTTTTACAATGAAATCGCTCACTGGGAAATGATTTA
TGGTCATATTGATGATATTCAAATACTGAAAAAAGTCCTGTTAGCAATTG
TTGCTCCCTGGTACTACCTAGGGCAAATGTCAATTAAAATTAGCCTAAAT
CACCATGGCGACAAGAATGGTAACCATGTTGGTGAAGGACATCCGCCCGT
GTCCGCCCAAACTACAGGAAGTCCACCCTTATCCAACCGAAAACGATTTT
TCGCGTACTTCAAATTTGCTTTCCCATTCTACTTATGGATTGTTTTACTT
CTTTTACAAATTCGATACCAAAACATAAATAGTGTTGGCTGGGCTGTTTT
TGTCGGGTTCTTGGTCCTTTCGAGTCGCATTCGTACGGCCCTTCGTCGCC
AGTATCGA
Run BLAST on NCBI

transcript from alignment at sc0003978:4391..6166+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043182 ID=TCONS_00043182|Name=TCONS_00043182|organism=Clytia hemisphaerica|type=transcript|length=1776bp|location=Sequence derived from alignment at sc0003978:4391..6166+ (Clytia hemisphaerica)
AGGTTGGGCACCTTTGGTCTCAATATTTGCCACACGGATCAGTAAAGGTC
GAACAATCAAAAGTGTGATCGAAATTGCTTTCATAATCCCAAGCTTTGTC
AATTTCATTTGGTTTGTCGTTGTAGGAGGTGTGTCCATTGATATGGAAAA
TCAAGCCATTTCAATGAGACTCCATTGCGGCATGAACAAGTAGGTGGTCT
CACGCACTAAGATAGCTcggtttttgaaaagttttagcTACGCGGGactt
attttacaaaataaGTTGGGACTGAACCTCGAaagtttctcaaaattttc
tgatttttctaatTTCGCATAAAATTGCACTCTTGGACTGAACtgacttt
ttgtatttttgttttgacgGCCCTACCTAGAACTGTTACATGTTTACTTT
GGCGGTAAACATTGCTATAAATCCAGCGTtcgtgtgaaaaccacgcgggt
caTGCAACTTACATAAAAAAGGAGTTCAAAAATACAGCAAGATTTCATCG
AAATACTATCTATCTTATTTTTACTAGAACAACACGTGATGCTTTAGGAG
CTCCTGATTGGCTACACAGTCTCGGTTGTATTGATGAAGACAAACGATTC
TATATGGTAATCGAAAAATATGAAGATATCAAGATTATTCTTCAGATTAT
CGCTTTGATGCTTACCTTACTGTATTTTATCACGAGTTTCGATTCAGCTG
CTCTCGTCATGGGCACCATCTCCAGTAACGGTTagtcctttgtttttttt
ctcatttttgtgaCTATTCCTTGTTCTTTAATTAAACTACAACTTTGTAT
CAAAACCGCGACTGAAAcctgtccattttcctaatgaTAAAACGGTTCAC
AACAGCGAACGAGGGCGGCATGGCCGAAACGAAAGATTTTCTGGGAAATA
GAATTCTATACAAAGCGATGGTATTTTGTACAATCTAcccttttcgaaat
tttattcTTATTCTTAAAGGTCTAGAAGAGCCACCATTGATTCAACGTAT
TTTCTGGTGCATCACCATAGCTGCTTGTACTTCAGCTCTTATTGTTTATA
CTGAATTCACTGATCGTGCTGACGTCAATGCTTTTGCTATTCTGGCTGGC
CTTCCGTTCGCAGTTTTGATGTGTTTCTGTGCTATTTCACTGTGGCGGTG
AGTTAATTATCATTAATTGGGAACTCTAGATAAGTCCCCCACCCTCCCGA
ACAGTTAGCTAAAACATTTTCGCATGGGAAATTAAATCAATCTAACTAGC
TCCTTTTAAAATCAAACCCTTGGTAGGTACCAAGATGAACATTCTGTTTG
AAAGAATATTCATTAAAGCAAAGGTAACAAATATCAAACAAGCATATATT
TTTTATAGATTATTGAAAATGGAACCATATTGGTTTTACAATGAAATCGC
TCACTGGGAAATGATTTATGGTCATATTGATGATATTCAAATACTGAAAA
AAGTCCTGTTAGCAATTGTTGCTCCCTGGTACTACCTAGGGCAAATGTCA
ATTAAAATTAGCCTAAATCACCATGGCGACAAGAATGGTAACCATGTTGG
TGAAGGACATCCGCCCGTGTCCGCCCAAACTACAGGAAGTCCACCCTTAT
CCAACCGAAAACGATTTTTCGCGTACTTCAAATTTGCTTTCCCATTCTAC
TTATGGATTGTTTTACTTCTTTTACAAATTCGATACCAAAACATAAATAG
TGTTGGCTGGGCTGTTTTTGTCGGGTTCTTGGTCCTTTCGAGTCGCATTC
GTACGGCCCTTCGTCGCCAGTATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026903XLOC_026903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043182-exon-sc0003978-1491911889:4391..4579TCONS_00043182-exon-sc0003978-1491911889:4391..4579Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1510915933:4391..4579TCONS_00043182-exon-sc0003978-1510915933:4391..4579Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1575043694:4391..4579TCONS_00043182-exon-sc0003978-1575043694:4391..4579Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1491911889:4918..4996TCONS_00043182-exon-sc0003978-1491911889:4918..4996Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1510915933:4918..4996TCONS_00043182-exon-sc0003978-1510915933:4918..4996Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1575043694:4918..4996TCONS_00043182-exon-sc0003978-1575043694:4918..4996Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1491911889:5077..5120TCONS_00043182-exon-sc0003978-1491911889:5077..5120Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1510915933:5077..5120TCONS_00043182-exon-sc0003978-1510915933:5077..5120Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1575043694:5077..5120TCONS_00043182-exon-sc0003978-1575043694:5077..5120Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1491911889:5360..5537TCONS_00043182-exon-sc0003978-1491911889:5360..5537Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1510915933:5360..5537TCONS_00043182-exon-sc0003978-1510915933:5360..5537Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1575043694:5360..5537TCONS_00043182-exon-sc0003978-1575043694:5360..5537Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1491911889:5749..6166TCONS_00043182-exon-sc0003978-1491911889:5749..6166Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1510915933:5749..6166TCONS_00043182-exon-sc0003978-1510915933:5749..6166Clytia hemisphaericaexon
TCONS_00043182-exon-sc0003978-1575043694:5749..6166TCONS_00043182-exon-sc0003978-1575043694:5749..6166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003978supercontigsc0003978:4391..6166 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.306822	0.185798	0.808005	0	0.217286	0.400231	0	0.013153	0.0307088	0	0.0760194	0	8.92111	5.28801	1.34108	1.68318	0.262035	0.254161	7.69061	7.60563	1.53539	0.36378	5.9106	8.75664	10.4166	6.23781	1.82821	0.582199	0.488936	0.178949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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