TCONS_00043152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043152
Unique NameTCONS_00043152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043152 ID=TCONS_00043152|Name=TCONS_00043152|organism=Clytia hemisphaerica|type=transcript|length=690bp
TGGGATTTGAAGATGTTATGTTATGTCAATTCCCAAACTAATCTCTCCAA
TTCTTGTCAACAGTTTATGGATCTTTATCAAAATTAATTGTTTTGAGCTC
AAGTACACAAATATTTTTACATATAGTATACATAAGCCTCTTTTGAAGCG
TTTGATAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAA
CAAGGAGTGGCATAAGAGAAACATCAAATATATTGCTTATCAAAGATGAA
ATCTCTTCTACTCTATCTGATACTTGCGGTCTTGGTTGGCAATGCAAACT
CGAGCAGATTCTATGCTGTGGTCgaaaaaccccaaaaatatTGCACCTTC
GAAGGATATGTTCCCGGAGGCAATAAGATTACGGTGGCAAAAGTCATTGC
TCCTGTGGCGAAAATGCAGAAGAATGTGTTCAGTGGGCTTGCTGgcaatc
tgggaaaagcaagtGTGGGTGCTCAACATTCAACCATGTTATTGAAAGGT
TTTGGAAAGCTAGCGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTT
GTTTGGTGTTGGATTCTCCCTTGTCAAATCGTTTATTGAACCCTCACCAC
AAGATATTTTAGATCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAG
GTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00043152-protein

>TCONS_00043152-protein ID=TCONS_00043152-protein|Name=TCONS_00043152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MKSLLLYLILAVLVGNANSSRFYAVVEKPQKYCTFEGYVPGGNKITVAKV
IAPVAKMQKNVFSGLAGNLGKASVGAQHSTMLLKGFGKLANIAPKLGPAL
GLFGVGFSLVKSFIEPSPQDILDQANKAIAELTNEVNSRLDEMKGYVE
Run BLAST on NCBI

transcript from alignment at sc0003960:1..2085-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043152 ID=TCONS_00043152|Name=TCONS_00043152|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0003960:1..2085- (Clytia hemisphaerica)
TGGGATTTGAAGATGTTATGTTATGTCAATTCCCAAACTAATCTCTCCAA
TTCTTGTCAACAGTTTATGGATCTTTATCAAAATTAATTGTTTTGAGCTC
AAGTACACAAATATTTTTACATATAGTATACATAAGCCTCTTTTGAAGCG
TTTGATAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAA
CAAGGAGTGGCATAAGAGAAACATCAAATATATTGGTAAGTCCTTGAAAC
TGAGCTACTGTAGTATTGCTTGACTGAAAATCTTGTTACATGTGTATACG
AATAATATTAATTCACATCGATTTTTCGACAGCTCACCCTTATAATCTAA
TCTGGAATTTTCCTTTGCTGGAATAAAATCAATATAGAAGCATGTTGAAA
AGGAAATCTGAAACTGGAAATTAAATCTTTAAACTTATTTCAGCTTATCA
AAGATGAAATCTCTTCTACTCTATCTGATACTTGCGGTCTTGGTTGGCAA
TGCAAACTCGAGCAGATTCTATGCTGTGGTCGAAAAACCCCAAAAATATT
GCACCTTCGAAGGATATGTTCCCGGAGGCAATAAGATTACGGTGGCAAAA
GTCATTGCTCCTGTGGCGAAAATGCAGAAGAATGTGTTCAGTGGGCTTGC
TGGCAATCTGGGAAAAGCAAGTGTGGGTGCTCAACATTCAACCATGTTAT
TGAAAGGTTTTGGAAAGCTAGGTAAATTTAGAACATTTTCATTGATATTT
TAGTCTTTTAACTTTCTCTCAATATTTATACCGTAGAAGGCTCGTGTTTT
TCTTTTTGCAAAGGTTGAAAAAAGCGCATTCTTGTCTACAAGGCCCTCAG
CGGTTTGCGTGAATGCGTGAATTTCGAAAAAACTGAATGATTGCGTGAAT
TGATGTTCTGCTAAGGGGCCTCCTACAACGACTCAACCTTTCAGTGTCGA
TTATCACTAAGTGAATCACTTTCTGTCCAAATGATTTTCAGGGCCACATA
CCTTGCAGTGCGTTGCTCCTGTTTCATCTGCCTTACCCTCACTGGGATCC
CTTTTTCGTCGTGCTAGGAAAAAAATGTTAGCCTATTATAAAAGTGTAAA
GAAGACAAAACGAACAGCGTATCTTAAAAATTCTTTCTTTCCAATCATTC
TTTCTGTAGCGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTTGTTT
GGTGTTGGATTCTCCCTTGTCAAATCGTTTATTGAACCCTCACCACAAGA
TATTTTAGATCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAGGTAA
AGTTTGCAGTAAACCCTCGCTTATTCGAACTTCTATTATTCGAATTTTTT
TCTATAATTCGAATATGTTTCTAGTCCCCTACAAGTAGAATCTCTTTTAA
AATCCTTCAACAACTATGATCCCTGTTCGAGTAGGAATCAGAGAGTCCAC
GTTCTATAACGTTAAGTAAGGGGTCAACATTCCATTTTAAGATATTTCGA
CATTTTTTAGAGAGGGAGGGCAGGCAACTGTTTTTATATAATTAGTTAAA
ATTTGACTTTGTTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATG
GAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTNT
GTTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATGGAAGAAAAGC
AGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTTTGAAAATATCA
AGATGGCTAACACTCTCCCAACTAGTCTAGATGATATTTCTTAAACATTC
TTGACTTTGGGCCGTTGAACTTTGATCGAGCGCGCGATGGAATCCTCAGT
TTTTGTACTTTTATGATATGGAGTAGGAAATCTTTCGAAAGAAGTCTTTT
TAAAGCTCTCTTTCCACCGAGTTTGTCTCTTCTCATTTTTAAACCAAAAT
TTGGTACTTCTAGGGGTAAAGTTCTGGGGTCTGGTCTGCACATGTCCGTC
CTTCAGAAAACCTAGTGGCAACCCTGTTCTGTTGTTCAACTTCAGGTTAA
CAGTAGATTGGATGAAATGAAAGGGTATGTCGAAG

Coding sequence (CDS) from alignment at sc0003960:1..2085-

>TCONS_00043152 ID=TCONS_00043152|Name=TCONS_00043152|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0003960:1..2085- (Clytia hemisphaerica)
GTTAACAGTAGATTGGATGAAATGAAAGGGTATGTCGAACGAACATTGCG
CCGAAGTTGGGTCCAGCTCTCGGTTTGTTTGGTGTTGGATTCTCCCTTGT
CAAATCGTTTATTGAACCCTCACCACAAGATATTTTAGATCAAGCCAATA
AAGCTATCGCTGAGTTGACCAACGAGATGAAATCTCTTCTACTCTATCTG
ATACTTGCGGTCTTGGTTGGCAATGCAAACTCGAGCAGATTCTATGCTGT
GGTCGAAAAACCCCAAAAATATTGCACCTTCGAAGGATATGTTCCCGGAG
GCAATAAGATTACGGTGGCAAAAGTCATTGCTCCTGTGGCGAAAATGCAG
AAGAATGTGTTCAGTGGGCTTGCTGGCAATCTGGGAAAAGCAAGTGTGGG
TGCTCAACATTCAACCATGTTATTGAAAGGTTTTGGAAAGCTAGGTTAAC
AGTAGATTGGATGAAATGAAAGGGTATGTCGAACGAACATTGCGCCGAAG
TTGGGTCCAGCTCTCGGTTTGTTTGGTGTTGGATTCTCCCTTGTCAAATC
GTTTATTGAACCCTCACCACAAGATATTTTAGATCAAGCCAATAAAGCTA
TCGCTGAGTTGACCAACGAGATGAAATCTCTTCTACTCTATCTGATACTT
GCGGTCTTGGTTGGCAATGCAAACTCGAGCAGATTCTATGCTGTGGTCGA
AAAACCCCAAAAATATTGCACCTTCGAAGGATATGTTCCCGGAGGCAATA
AGATTACGGTGGCAAAAGTCATTGCTCCTGTGGCGAAAATGCAGAAGAAT
GTGTTCAGTGGGCTTGCTGGCAATCTGGGAAAAGCAAGTGTGGGTGCTCA
ACATTCAACCATGTTATTGAAAGGTTTTGGAAAGCTAGGTTAACAGTAGA
TTGGATGAAATGAAAGGGTATGTCGAACGAACATTGCGCCGAAGTTGGGT
CCAGCTCTCGGTTTGTTTGGTGTTGGATTCTCCCTTGTCAAATCGTTTAT
TGAACCCTCACCACAAGATATTTTAGATCAAGCCAATAAAGCTATCGCTG
AGTTGACCAACGAGATGAAATCTCTTCTACTCTATCTGATACTTGCGGTC
TTGGTTGGCAATGCAAACTCGAGCAGATTCTATGCTGTGGTCGAAAAACC
CCAAAAATATTGCACCTTCGAAGGATATGTTCCCGGAGGCAATAAGATTA
CGGTGGCAAAAGTCATTGCTCCTGTGGCGAAAATGCAGAAGAATGTGTTC
AGTGGGCTTGCTGGCAATCTGGGAAAAGCAAGTGTGGGTGCTCAACATTC
AACCATGTTATTGAAAGGTTTTGGAAAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026875XLOC_026875Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043152-proteinTCONS_00043152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043152-exon-sc0003960-1575043694:1851..2085TCONS_00043152-exon-sc0003960-1575043694:1851..2085Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1575043694:1365..1642TCONS_00043152-exon-sc0003960-1575043694:1365..1642Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1575043694:790..926TCONS_00043152-exon-sc0003960-1575043694:790..926Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1575043694:1..40TCONS_00043152-exon-sc0003960-1575043694:1..40Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1510915933:1851..2085TCONS_00043152-exon-sc0003960-1510915933:1851..2085Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1510915933:1365..1642TCONS_00043152-exon-sc0003960-1510915933:1365..1642Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1510915933:790..926TCONS_00043152-exon-sc0003960-1510915933:790..926Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1510915933:1..40TCONS_00043152-exon-sc0003960-1510915933:1..40Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1491911889:1851..2085TCONS_00043152-exon-sc0003960-1491911889:1851..2085Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1491911889:1365..1642TCONS_00043152-exon-sc0003960-1491911889:1365..1642Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1491911889:790..926TCONS_00043152-exon-sc0003960-1491911889:790..926Clytia hemisphaericaexon
TCONS_00043152-exon-sc0003960-1491911889:1..40TCONS_00043152-exon-sc0003960-1491911889:1..40Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003960supercontigsc0003960:1..2085 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
253.899	273.974	280.372	268.464	137.264	143.438	120.314	109.758	109.959	99.3597	117.257	141.334	0.363437	0.365896	0	0.0197743	3.22187	5.00511	0.770118	0	25.2936	20.1666	81.9002	65.3721	0	0.121708	4.56202	5.92318	39.1818	43.6131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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