TCONS_00043134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043134
Unique NameTCONS_00043134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043134 ID=TCONS_00043134|Name=TCONS_00043134|organism=Clytia hemisphaerica|type=transcript|length=267bp
TTGAAAGTAAAATGGAATCTCTACTGAGCAGATTAGATACGTCAGCTCAT
CCAACCTATGGAGAATTGCAATATATTGTTGACTTACTCTACAATGGTTA
TTATGGTTTTGAAGCCCTTACCAAAAGAGATTTGAATGGTGTTATTTGTG
GACTTAGTGGAATTGCAGGGAAGATTTATTATGGTgatggaaatgaaaaa
aattgttgtaCTATGATGAATatcaATATCAAGGAAAGCTCAAAAAATGC
CCCAACTCAAGAAACCC
Run BLAST on NCBI

transcript from alignment at sc0003951:2918..5561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043134 ID=TCONS_00043134|Name=TCONS_00043134|organism=Clytia hemisphaerica|type=transcript|length=2644bp|location=Sequence derived from alignment at sc0003951:2918..5561- (Clytia hemisphaerica)
TTGAAAGTAAAATGGAATCTCTACTGAGCAGATTAGATACGGTATTTCAA
TATTTCAAGAAATTCAATTCTGGAAATAGTAAATGTTTGTTTTGAATTAC
CCAAGTAAGCTCTCAGCATTCTCTCCTATCACTTGTTCTGCTCCTACACA
AACCACAAAAAATGTAAAGAAAATGTAGAAGCAGGAATCAAGAGCCACCC
AGTCTGATCCAGTAAAGTGCCAAGAAAATTGAAAAGGTTCAGGCTGAAAA
AAAAGAAATTAAGTGTCTGAGAGTTTCTCTTCTTATATTTTCCAGTCAGC
TCATCCAACCTATGGTAACCTGATAACAGATGTTTGTAATTTTCTTACGC
GCACGGTAAACCTCTGAAGGCGCTTGAAAATTGTTTTCACACATCCCTTT
AGAGCTTCAGCGTGGTGTGCAGAAAACATTCACAATCTGATCTCAGGTTA
ACCTATGGAGAATTGCAATATATTGTNCTGCTAAGAAAATTGAAAAGTTT
CAGGCTGAAAAAAAGAAATCAAGTGTCTGAGAGTTTCTCTTCTTATATTT
TCCAGTCAGCTCATCCAACCTATGGAGAATTGCAATATATTGTTGAGTTA
CTCTACAATGGTTATTATGGTTTTGAAGCCCTTACCAAAAGAGATTTGAA
TGATGTTATTTGTGGACTTTGTGGAATTGCAGGGAAGATTTATTATGGTG
ATGGAAAGGAAAAAAAAGTTGTACTATGATGAATGTAAGTAGAATTAATT
AGGTTCTAAAAAATCTAAGTTATTAAATTTTGTGTTCCTGGTTTCACATC
AGATATGTCTGCCCTTTTGTTACCTATGTTATCAACTAAAAAAAGTGAAA
ATATTGAAATATTGATTCTAGAGCAAAAAACCTTCCTGTTGCTCAAAAGT
AAATTTAGAAGGAGGAAAGGATTTTTGAGAACAATCAGAAAGAGAGGAGT
TCTTTCCTTTGTAACCTAGTTGATTAAGCAAGCATAAAAAGAAATAAAGG
CCTGTTCTATGGATCACTCCATTGTACATCTTTCGATTTTTTCAATTCCC
TGAACTTTATTTTTGACCTATTTCTGCAGTCTTAATAATACACTCCTAAC
AATACTATACCGCTTCTGTTTTAAAGAAGGGGAAATCATTGCTGTCTATT
ATTAGGAAAGTATGTATCCAAGAGGGAAGTATTTTTAATTTTTAGATCAA
TATCAAAGAAAGCTAAAAAAATGCCCCAACTCAAGAAATNAATTTTTAGA
TCAATATCAAGGAAAGCTCAAAAAATGCCCCAACTCAAGAAACCCAGGTC
CAGGATATTGAGGAGGATGCTGTATCAGAGAATGATGAAAGTAAACTTGA
TTTGTGTTTGGATCGCATTGAAAATCAACTGATAGAGAGGTGTATTTATG
TTTCAAAAAGAAATGAAACACTTACAATGAATATTGAGGATGTCCCCCTT
CTTATACCATCATTACAAAGGAAGCAGGAACTGAATACAGAGATGAAAAA
AAAGCTGCTATCTGAAAGATACTGATAAAATTGANAGCAGCTGGAATTTG
ACAAACTTGTGAAGCCATGTAGCTATGATTGTATTTTTCTAGGACTATTC
AATGTGTGTAACAAGATAATCATTTCATTGGATATATTAAATGAATGGAG
AAGTGAATTCAAGCGAGGGTTGAAAGTAAAATGGAATCTCTACTGAGCAG
ATTAGATACGGTATTTCAATATTTCAAGAAATTCAATTCTGGAAATAGTT
AATGTTTGTTTTGAATTACCCAAGTAAGCTCCCAGTATTCTCTCCTATCA
CTTGTTTTGCTCCTACACAAACCACAAAAAAATATAAAGAAAATGTAGAA
GCAGGAATCAAGAGCCACCCAGTCTGACCCAGTAAAGTGCTAAGAAAATT
GAAAAGGTTCAGGCTGAAAAAAAGAAATCAAGTGTCTGAGAGTTTCTCTT
CTTATATTTTCCAGTCAGCTCATCCAACCTATGGAGAATTGCAATATATT
GTTGACTTACTCTACAATGGTTATTATGGTTTTGAAGCCCTTACCAAAAG
AGATTTGAATGGTGTTATTTGTGGACTTAGTGGAATTGCAGGGAAGATTT
ATTATGGTGATGGAAATGAAAAAAATTGTTGTACTATGATGAATGTAAGT
AGAATTAATTAGGTTCTAAAAAATCTAAGTTATTAAATTTTGTGTTGCTG
GTTTCACATCAGATATGTCTGCCCTTTTGTTACCTATGTTATCAACTAAA
AAAAGTGAAAATCTTGATTCAAGAGCGCAAAACCTTTCTGTTGCTCAAAA
GTAAATTTAGAAGGAGGAAAGGATTTTTTGAGAACAATCAGAAAGAGAGC
AGTTCTTTCCTTTGTAACCTATTTGATTGAGCAAGCATAAAAAGAAATAA
AGGCCTGTTCTATGGAACACTCCATTGTACATCTTTCGATTTTTTCAATT
CTCTAAACTTTATTTTTGCCCTACTTCTGCAGTCTTAATAATACACTCCT
AACAATACTCTACAGCTTCTGTTTTATAGAAGGGGAAATCATTGCTGTCT
ATCATTAGGAAAGTATGTATCCAAGAGGGAAGTATTTTTAATTTTTAGAT
CAATATCAAGGAAAGCTCAAAAAATGCCCCAACTCAAGAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026863XLOC_026863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043134-exon-sc0003951-1575043694:5521..5561TCONS_00043134-exon-sc0003951-1575043694:5521..5561Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1575043694:3418..3597TCONS_00043134-exon-sc0003951-1575043694:3418..3597Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1575043694:2918..2963TCONS_00043134-exon-sc0003951-1575043694:2918..2963Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1510915933:5521..5561TCONS_00043134-exon-sc0003951-1510915933:5521..5561Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1510915933:3418..3597TCONS_00043134-exon-sc0003951-1510915933:3418..3597Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1510915933:2918..2963TCONS_00043134-exon-sc0003951-1510915933:2918..2963Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1491911889:5521..5561TCONS_00043134-exon-sc0003951-1491911889:5521..5561Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1491911889:3418..3597TCONS_00043134-exon-sc0003951-1491911889:3418..3597Clytia hemisphaericaexon
TCONS_00043134-exon-sc0003951-1491911889:2918..2963TCONS_00043134-exon-sc0003951-1491911889:2918..2963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003951supercontigsc0003951:2918..5561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0433252	0.467721	0	0	0.756091	6.74995	2.26722	0	4.58881	2.2512	1.44415	0.0550352	2.09488	5.16152	0	0	0	0	0	0	0	0	0.0783889	0	0	0	0.357497	0	0	0.543533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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