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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043120 ID=TCONS_00043120|Name=TCONS_00043120|organism=Clytia hemisphaerica|type=transcript|length=892bp
GAATTTTTCAAACAGGATTCGAAATCTTTTTCAACTGAATGTCCATCATc
gataaaaacggcaatttttatTCCAAAATCTCGCCAAAAGCCTATCAACG
GTCTTAGTAATTTTGTAAAGATATATGGACCTGACGTCAAGCCGAATGGC
AATAcagtaaaactaaaaaatgaaatatgccCTTCCAGGTTCCAGGCGAA
AGATAGATATTTCTGATGAGGCGGAAATATTTCAACGTGGTGATAACCAG
ACTTTATGTCAAATGTGAATAAGAATCCGTTTTTGtcgataaaattttga
aaaattgaccaatcgTCGAACTTAAcgttttgtttaaaaacaaaGTAATT
TATGTGCCTAAGATCTAGTATCAGTCTCTTCTTACCGTTTCTAATCGCAA
CGGAGAGTGGATTAAcgaattttggtttttgtgACAATTTCTTTATTCTG
CCTGttttcaaaagctttaaaaGTTCTTTGGAAACAAATTCAGAGTCTAT
AGTTGCGgacttattattttttagattaCATGGTGTTGGTTCGTAAAGAA
AAGGAATTTTGTAGCCATCTTTTATGGTAGATAGTACGAATTCACTCGCT
CCTATGTGCTCCCAATATTCGAGGTTCTGTCTCAAACGGCCTTTAGTACT
AATCAAAGAAGAATCAAGAATTAAAGACTTATCTGTTTGGGTGTTGAGAT
TGGCATAGCATTGATACGACCAATGTCCTTCTCTACCGCAACGGAAACAG
CCGTTGCTTCTTGGTCGCGTTTGTTGTGGATTGAAGTGTTGTCGAGGATT
TACTTGACGGTTCTGTTGGATAGGTCTGAAGCTAGGGAAGGCTGGATAGT
TAAACGATGAGTTATCGATTTGTTGTCGTTTTGGAAAGCTAT Run BLAST on NCBI protein sequence of TCONS_00043120-protein >TCONS_00043120-protein ID=TCONS_00043120-protein|Name=TCONS_00043120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
SFPKRQQIDNSSFNYPAFPSFRPIQQNRQVNPRQHFNPQQTRPRSNGCFR
CGREGHWSYQCYANLNTQTDKSLILDSSLISTKGRLRQNLEYWEHIGASE
FVLSTIKDGYKIPFLYEPTPCNLKNNKSATIDSEFVSKELLKLLKTGRIK
KLSQKPKFVNPLSVAIRNGKKRLILDLRHINYFVFKQNVKFDDWSIFQNF
IDKNGFLFTFDIKSGYHHVEIFPPHQKYLSFAWNLEGHISFFSFTVLPFG
LTSGPYIFTKLLRPLIGFWRDFGIKIAVFIDDGHSVEKDFESCLKN Run BLAST on NCBI transcript from alignment at sc0003929:391..1282 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043120 ID=TCONS_00043120|Name=TCONS_00043120|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0003929:391..1282 (Clytia hemisphaerica)
ATAGCTTTCCAAAACGACAACAAATCGATAACTCATCGTTTAACTATCCA
GCCTTCCCTAGCTTCAGACCTATCCAACAGAACCGTCAAGTAAATCCTCG
ACAACACTTCAATCCACAACAAACGCGACCAAGAAGCAACGGCTGTTTCC
GTTGCGGTAGAGAAGGACATTGGTCGTATCAATGCTATGCCAATCTCAAC
ACCCAAACAGATAAGTCTTTAATTCTTGATTCTTCTTTGATTAGTACTAA
AGGCCGTTTGAGACAGAACCTCGAATATTGGGAGCACATAGGAGCGAGTG
AATTCGTACTATCTACCATAAAAGATGGCTACAAAATTCCTTTTCTTTAC
GAACCAACACCATGtaatctaaaaaataataagtcCGCAACTATAGACTC
TGAATTTGTTTCCAAAGAACttttaaagcttttgaaaaCAGGCAGAATAA
AGAAATTGTcacaaaaaccaaaattcgTTAATCCACTCTCCGTTGCGATT
AGAAACGGTAAGAAGAGACTGATACTAGATCTTAGGCACATAAATTACtt
tgtttttaaacaaaacgTTAAGTTCGAcgattggtcaatttttcaaaatt
ttatcgaCAAAAACGGATTCTTATTCACATTTGACATAAAGTCTGGTTAT
CACCACGTTGAAATATTTCCGCCTCATCAGAAATATCTATCTTTCGCCTG
GAACCTGGAAGggcatatttcattttttagttttactgTATTGCCATTCG
GCTTGACGTCAGGTCCATATATCTTTACAAAATTACTAAGACCGTTGATA
GGCTTTTGGCGAGATTTTGGAataaaaattgccgtttttatcgATGATGG
ACATTCAGTTGAAAAAGATTTCGAATCCTGTTTGAAAAATTC Coding sequence (CDS) from alignment at sc0003929:391..1282 >TCONS_00043120 ID=TCONS_00043120|Name=TCONS_00043120|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0003929:391..1282 (Clytia hemisphaerica)
AGCTTTCCAAAACGACAACAAATCGATAACTCATCGTTTAACTATCCAGC
CTTCCCTAGCTTCAGACCTATCCAACAGAACCGTCAAGTAAATCCTCGAC
AACACTTCAATCCACAACAAACGCGACCAAGAAGCAACGGCTGTTTCCGT
TGCGGTAGAGAAGGACATTGGTCGTATCAATGCTATGCCAATCTCAACAC
CCAAACAGATAAGTCTTTAATTCTTGATTCTTCTTTGATTAGTACTAAAG
GCCGTTTGAGACAGAACCTCGAATATTGGGAGCACATAGGAGCGAGTGAA
TTCGTACTATCTACCATAAAAGATGGCTACAAAATTCCTTTTCTTTACGA
ACCAACACCATGtaatctaaaaaataataagtcCGCAACTATAGACTCTG
AATTTGTTTCCAAAGAACttttaaagcttttgaaaaCAGGCAGAATAAAG
AAATTGTcacaaaaaccaaaattcgTTAATCCACTCTCCGTTGCGATTAG
AAACGGTAAGAAGAGACTGATACTAGATCTTAGGCACATAAATTACtttg
tttttaaacaaaacgTTAAGTTCGAcgattggtcaatttttcaaaatttt
atcgaCAAAAACGGATTCTTATTCACATTTGACATAAAGTCTGGTTATCA
CCACGTTGAAATATTTCCGCCTCATCAGAAATATCTATCTTTCGCCTGGA
ACCTGGAAGggcatatttcattttttagttttactgTATTGCCATTCGGC
TTGACGTCAGGTCCATATATCTTTACAAAATTACTAAGACCGTTGATAGG
CTTTTGGCGAGATTTTGGAataaaaattgccgtttttatcgATGATGGAC
ATTCAGTTGAAAAAGATTTCGAATCCTGTTTGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043120-exon-sc0003929-1491911889:391..1282 | TCONS_00043120-exon-sc0003929-1491911889:391..1282 | Clytia hemisphaerica | exon |
| TCONS_00043120-exon-sc0003929-1510915933:391..1282 | TCONS_00043120-exon-sc0003929-1510915933:391..1282 | Clytia hemisphaerica | exon |
| TCONS_00043120-exon-sc0003929-1575043694:391..1282 | TCONS_00043120-exon-sc0003929-1575043694:391..1282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003929 | supercontig | sc0003929:391..1282 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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