|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043118 ID=TCONS_00043118|Name=TCONS_00043118|organism=Clytia hemisphaerica|type=transcript|length=2602bpRun BLAST on NCBI protein sequence of TCONS_00043118-protein >TCONS_00043118-protein ID=TCONS_00043118-protein|Name=TCONS_00043118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp MKAREQACNCNIVVTQPRRISAISVAERVATERSEPLGHSVGYSVRFDTVRun BLAST on NCBI transcript from alignment at sc0003928:1417..8446+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00043118 ID=TCONS_00043118|Name=TCONS_00043118|organism=Clytia hemisphaerica|type=transcript|length=7030bp|location=Sequence derived from alignment at sc0003928:1417..8446+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003928:1417..8446+ >TCONS_00043118 ID=TCONS_00043118|Name=TCONS_00043118|organism=Clytia hemisphaerica|type=CDS|length=10680bp|location=Sequence derived from alignment at sc0003928:1417..8446+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00043118 vs. Swiss-Prot (Human)
Match: DHX9 (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4) HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0 Identity = 277/457 (60.61%), Postives = 350/457 (76.59%), Query Frame = 3
Query: 960 IKWEPPTHEVNPWLSKEQLED--AELPPPLDNQQLYDEFQTKFE-DENFKNFLEQRKSLPVYNHKKTVVDHIKQNQVVIIRGETGCGKTTQVPQYILDEYLMKAREQACNCNIVVTQPRRISAISVAERVATERSEPLGHSVGYSVRFDTVLPRGQASILFCTVGTLLRRLENGMTGISHVIVDEIHERDINSDFLLIILRDMLQIFPNMRVILMSATIDTTIFSQFFGDCPIIELEGRVHPVQEYYLEDCIQMLGFVPP-LNTXXXXXXXXXXXXXXXNLNTVCEGDYSLQTKNSMAQLSEREIPIELVEGLLTYISTLRVPGAVLVFLPGWSVIHKFVKYFQMHQVFGSRDYVILPLHSQIPREDQRRVFQPVAENVRKIIFSTNIAETSVTIDDVVFVIDSCKAKIKLFTSHNNMTNYAKVWASRTNLEQRRGRAGRVRPGFCFHLCSRARYEK 2318
+ W PP NPW S E A P + L +E + E D + + L++R+ LPV + +++ I QN VVIIRG TGCGKTTQVPQ+ILD+++ R A CNIVVTQPRRISA+SVAERVA ER E G S GYSVRF+++LPR ASI+FCTVG LLR+LE G+ GISHVIVDEIHERDIN+DFLL++LRD++Q +P +R++LMSATIDT++F ++F +CPIIE+ GR +PVQEY+LEDCIQM FVPP + KKK ++ + E+ + N N +C +Y +T+ SM+QL+E+E P EL+E LL YI TL VPGAVLVFLPGW++I+ K+ +M+ FGS Y ILPLHSQIPRE+QR+VF PV V K+I STNIAETS+TI+DVV+VIDSCK K+KLFT+HNNMTNYA VWAS+TNLEQR+GRAGRVRPGFCFHLCSRAR+E+
Sbjct: 330 VPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFLEDCIQMTHFVPPPKDKKKKDKDDDGGEDDDANCNLICGDEYGPETRLSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFER 784 The following BLAST results are available for this feature:
BLAST of TCONS_00043118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.