TCONS_00043102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043102
Unique NameTCONS_00043102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043102 ID=TCONS_00043102|Name=TCONS_00043102|organism=Clytia hemisphaerica|type=transcript|length=406bp
ATAAAAAGGTCATAGCAGCTTTAGAAAGCAACATCATCTTAAACaTACCG
AGATCATGTCACATTCTCTCCGTGAGGCTCATTTCCCTTGGAGGCGAATC
TTTACCACTTCGCAAAGATATCGatataaaaataggaaaaacaCCTGGTG
TTGAATTTGTCATATCGTGTCTGACCGGTTCAGAGAACAacgcaaagaaa
aagaaaacggaAGAGGACACAAGAGAGGAAAGAAAGATCAAGAAAGGGGT
GGCGTATTTTGTGGTCATGAAGCAAAAAAGTATCGAAGACGAGATAAGAC
GTGTTATTGCAGGCGCAGgctttaaatcaaaaatcacttaCATCGGCCCG
CGTGGAGAAAACAGAAAAGCGACTGACATTTCTTTGTCCAGGCTCAAAAC
TACGAT
Run BLAST on NCBI

protein sequence of TCONS_00043102-protein

>TCONS_00043102-protein ID=TCONS_00043102-protein|Name=TCONS_00043102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
KKVIAALESNIILNIPRSCHILSVRLISLGGESLPLRKDIDIKIGKTPGV
EFVISCLTGSENNAKKKKTEEDTREERKIKKGVAYFVVMKQKSIEDEIRR
VIAGAGFKSKITYIGPRGENRKATDISLSRLKTT
Run BLAST on NCBI

transcript from alignment at sc0003916:1049..1622-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043102 ID=TCONS_00043102|Name=TCONS_00043102|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0003916:1049..1622- (Clytia hemisphaerica)
ATAAAAAGGTCATAGCAGCTTTAGAAAGCAACATCATCTTAAACGTAAGT
GACTTTTACACGAAATTTTTTCAAAGTTTATTTGTCTCTAGTTCAAAGAG
ATCAATTTTACCTATTTCGATGTTTTATTTATTTGGCGACGTTTTTTCGT
CATTTGCTTTTTGATGGAAAAGAATGTTCTCATTTAAAAAGCCAATTTTT
TTTAACATTTAGATACCGAGATCATGTCACATTCTCTCCGTGAGGCTCAT
TTCCCTTGGAGGCGAATCTTTACCACTTCGCAAAGATATCGATATAAAAA
TAGGAAAAACACCTGGTGTTGAATTTGTCATATCGTGTCTGACCGGTTCA
GAGAACAACGCAAAGAAAAAGAAAACGGAAGAGGACACAAGAGAGGAAAG
AAAGATCAAGAAAGGGGTGGCGTATTTTGTGGTCATGAAGCAAAAAAGTA
TCGAAGACGAGATAAGACGTGTTATTGCAGGCGCAGGCTTTAAATCAAAA
ATCACTTACATCGGCCCGCGTGGAGAAAACAGAAAAGCGACTGACATTTC
TTTGTCCAGGCTCAAAACTACGAT

Coding sequence (CDS) from alignment at sc0003916:1049..1622-

>TCONS_00043102 ID=TCONS_00043102|Name=TCONS_00043102|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0003916:1049..1622- (Clytia hemisphaerica)
ATACCGAGATCATGTCACATTCTCTCCGTGAGGCTCATTTCCCTTGGAGG
CGAATCTTTACCACTTCGCAAAGATATCGATATAAAAATAGGAAAAACAC
CTGGTGTTGAATTTGTCATATCGTGTCTGACCGGTTCAGAGAACAACGCA
AAGAAAAAGAAAACGGAAGAGGACACAAGAGAGGAAAGAAAGATCAAGAA
AGGGGTGGCGTATTTTGTGGTCATGAAGCAAAAAAGTATCGAAGACGAGA
TAAGACGTGTTATTGCAGGCGCAGGCTTTAAATCAAAAATCACTTACATC
GGCCCGCGTGGAGAAAACAGAAAAGCGACTGACATTTCTTTGTCCAGGCT
CAAAACTACGAAAAAGGTCATAGCAGCTTTAGAAAGCAACATCATCTTAA
ACATACCGAGATCATGTCACATTCTCTCCGTGAGGCTCATTTCCCTTGGA
GGCGAATCTTTACCACTTCGCAAAGATATCGATATAAAAATAGGAAAAAC
ACCTGGTGTTGAATTTGTCATATCGTGTCTGACCGGTTCAGAGAACAACG
CAAAGAAAAAGAAAACGGAAGAGGACACAAGAGAGGAAAGAAAGATCAAG
AAAGGGGTGGCGTATTTTGTGGTCATGAAGCAAAAAAGTATCGAAGACGA
GATAAGACGTGTTATTGCAGGCGCAGGCTTTAAATCAAAAATCACTTACA
TCGGCCCGCGTGGAGAAAACAGAAAAGCGACTGACATTTCTTTGTCCAGG
CTCAAAACTACGAAAAAGGTCATAGCAGCTTTAGAAAGCAACATCATCTT
AAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026834XLOC_026834Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043102-proteinTCONS_00043102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043102-exon-sc0003916-1575043694:1579..1622TCONS_00043102-exon-sc0003916-1575043694:1579..1622Clytia hemisphaericaexon
TCONS_00043102-exon-sc0003916-1575043694:1049..1410TCONS_00043102-exon-sc0003916-1575043694:1049..1410Clytia hemisphaericaexon
TCONS_00043102-exon-sc0003916-1510915933:1579..1622TCONS_00043102-exon-sc0003916-1510915933:1579..1622Clytia hemisphaericaexon
TCONS_00043102-exon-sc0003916-1510915933:1049..1410TCONS_00043102-exon-sc0003916-1510915933:1049..1410Clytia hemisphaericaexon
TCONS_00043102-exon-sc0003916-1491911889:1579..1622TCONS_00043102-exon-sc0003916-1491911889:1579..1622Clytia hemisphaericaexon
TCONS_00043102-exon-sc0003916-1491911889:1049..1410TCONS_00043102-exon-sc0003916-1491911889:1049..1410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003916supercontigsc0003916:1049..1622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98099	3.16109	0.611722	0.598474	0.971446	0.383825	4.39915	3.25139	2.88341	3.94752	4.37893	2.1589	1.91636	5.09977	3.47688	5.59683	4.19098	4.98846	2.48872	5.0082	3.65655	3.05749	2.68434	3.75455	3.09368	7.93797	2.22245	2.10832	2.99829	2.24017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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