TCONS_00043016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043016
Unique NameTCONS_00043016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043016 ID=TCONS_00043016|Name=TCONS_00043016|organism=Clytia hemisphaerica|type=transcript|length=656bp
AGCCAATGTACCAACGATCACCTTTCATTTCCACCATCTTCTTTGgcatt
ttaaaaacatcaatGAGGCCTTGAAAGCTGGTTTTGTATGGAAAAAACTG
GCAATCTTTTCGATCATCTGGATTCAAAACTGGACtattctttttatata
atttctTGAAGAAGTCAAAGCTGAAATGTCGCGGAGCTGTCCAGTTTGTC
ATAACATCTGTTATAATGACGGGTCGACCAGAATAAGCGTATTTCTCCAT
GAAAACTTCAGAGCTTAATTTCTCAACACGGTCAAACTTATTAATACCTT
CACAGAAGGAGCAGTCAACAGGTGGTCTAAAGAAATCTAAGACAGCATCA
GTTAGTGGGACAACACAATTGTCTGACTGCAAATCAATgttagtgaaaaa
agttgaaaattcagCCAACTGCTTTTCTTCGACCCATCCTTTCTGTATTC
CAACATAAACAGCTACAACTACTAAAGCAATAACAACTAGGAGGTAAAAC
ACCCATTTTATTAGAATTGCCAAAACGTTTAATTTCTTTGGTTggtattt
ttgaacaaaatcaaGCTTCCTGATATCCTTATCTGACAACCCAAGttgtt
ttgctttttgaaaaagttttttgaatcttatttttgccaattcaagaTCT
CCATCT
Run BLAST on NCBI

transcript from alignment at sc0003859:6277..7005+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043016 ID=TCONS_00043016|Name=TCONS_00043016|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at sc0003859:6277..7005+ (Clytia hemisphaerica)
AGCCAATGTACCAACGATCACCTTTCATTTCCACCATCTTCTTTGgcatt
ttaaaaacatcaatGAGGCCTTGAAAGCTGGTTTTGTATGGAAAAAACTG
GCAATCTTTTCGATCATCTGGATTCAAAACTGGACtattctttttatata
atttctTGAAGAAGTCAAAGCTGAAATGTCGCGGAGCTGTCCAGTTTGTC
ATAACATCTGTTATAATGACGGGTCGACCAGAATAAGCGTATTTCTCCAT
GAAAACTTCAGAGCTTAATTTCTCAACACGGTCAAACTTATTAATACCTT
CACAGAAGGAGCAGTCAACAGGTGGTCTAAAGAAATCTAAGACAGCATCA
GTTAGTGGGACAACGCAATTGTCAGTCTGCAAATNAGTCAACAGGTGGTC
TAAAGAAATCTAAGACAGCATCAGTTAGTGGGACAACACAATTGTCTGAC
TGCAAATCAATgttagtgaaaaaagttgaaaattcagCCAACTGCTTTTC
TTCGACCCATCCTTTCTGTATTCCAACATAAACAGCTACAACTACTAAAG
CAATAACAACTAGGAGGTAAAACACCCATTTTATTAGAATTGCCAAAACG
TTTAATTTCTTTGGTTggtatttttgaacaaaatcaaGCTTCCTGATATC
CTTATCTGACAACCCAAGttgttttgctttttgaaaaagttttttgaatc
ttatttttgccaattcaagaTCTCCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026765XLOC_026765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043016-exon-sc0003859-1491911889:6277..6597TCONS_00043016-exon-sc0003859-1491911889:6277..6597Clytia hemisphaericaexon
TCONS_00043016-exon-sc0003859-1510915933:6277..6597TCONS_00043016-exon-sc0003859-1510915933:6277..6597Clytia hemisphaericaexon
TCONS_00043016-exon-sc0003859-1575043694:6277..6597TCONS_00043016-exon-sc0003859-1575043694:6277..6597Clytia hemisphaericaexon
TCONS_00043016-exon-sc0003859-1491911889:6671..7005TCONS_00043016-exon-sc0003859-1491911889:6671..7005Clytia hemisphaericaexon
TCONS_00043016-exon-sc0003859-1510915933:6671..7005TCONS_00043016-exon-sc0003859-1510915933:6671..7005Clytia hemisphaericaexon
TCONS_00043016-exon-sc0003859-1575043694:6671..7005TCONS_00043016-exon-sc0003859-1575043694:6671..7005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003859supercontigsc0003859:6277..7005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12665	2.32922	2.38163	3.82995	0	0	0	0	1.40176	1.18922	0.281341	0.764507	1.27926	1.17821	4.10608	4.11604	0	2.27251	2.57836	4.85501	6.20093	9.9527	9.27008	9.52761	0	0	7.17024	4.51847	10.6383	10.7695
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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