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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043013 ID=TCONS_00043013|Name=TCONS_00043013|organism=Clytia hemisphaerica|type=transcript|length=689bp
cacccggtatgtaAAAAATGTGAAAGTTGAAAAGCTCTCCTTTTTATTAC
CATTTAGCAAAGTCAAAGAAAGCATGTCCTCACTCGACCAAGAAGTTGAA
AAATACATGAATACAGCAAGCAATGGAACACAGATAATAATGAAACCTGA
AAAATCATTCTGTGGTTCAAGAAAGAGGCCAGCATCAACCCTGGGTTCCT
CTAACACTGCTACAAATGAACCCAGAACACCACCCAAACACCACTATTgc
ccaaaaacaccaaaatccATCAGTAAAAGTAATAGAAAGAAAACACCTTC
TAGCAAATATCGAACACCAACCAAAACACCAACAGAAAGTGATCGTTTTA
TACCACCTCGAGGCTCAATGAATTTCTCGTCAAGTCATTATAAGATTATG
CAAGGCTGGTCCTGCAACTCAGAAACAACAGACAATACAACATCAAATGG
GTGCATTGATATTAGTAGaacttttgaaaatgtgatGAACGAAAATATCA
ATCGAGTTGTGGGTGATATCAATACATCAAGAATTCTCCAATTTCAATCC
AAAGTTATGACTCCTAAGAAATCGAACACTCCTGCATCACTTCGGCAAAT
ACTACCTTCACCTTCCAAGCCAATTTCTCGCAAGATACAAACTACCGCTG
AAAAGGTGTTGGACGCTCCTTCATATATTGACGACTACt Run BLAST on NCBI protein sequence of TCONS_00043013-protein >TCONS_00043013-protein ID=TCONS_00043013-protein|Name=TCONS_00043013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
TRYVKNVKVEKLSFLLPFSKVKESMSSLDQEVEKYMNTASNGTQIIMKPE
KSFCGSRKRPASTLGSSNTATNEPRTPPKHHYCPKTPKSISKSNRKKTPS
SKYRTPTKTPTESDRFIPPRGSMNFSSSHYKIMQGWSCNSETTDNTTSNG
CIDISRTFENVMNENINRVVGDINTSRILQFQSKVMTPKKSNTPASLRQI
LPSPSKPISRKIQTTAEKVLDAPSYIDDY Run BLAST on NCBI transcript from alignment at sc0003854:178..1039- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043013 ID=TCONS_00043013|Name=TCONS_00043013|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at sc0003854:178..1039- (Clytia hemisphaerica)
CACCCGGTATGTAAAAAATGTGAAAGTTGAAAAGCTCTCCTTTTTATTAC
CATTTAGCAAAGTCAAAGAAAGCATGTCCTCACTCGACCAAGAAGTTGAA
AAATACATGAATACAGCAAGCAATGGAACACAGATAATAATGAAACCTGA
AAAATCATTCTGTGGTTCAAGAAAGAGGCCAGCATCAACCCTGGGTTCCT
CTAACACTGCTACAAATGAACCCAGAACACCACCCAAACACCACTATTGC
CCAAAAACACCAAAATCCATCAGTAAAAGTAATAGAAAGAAAACACCTTC
TAGCAAATATCGAACACCAACCAAAACACCAACAGAAAGTGATCGTTTTA
TACCACCTCGAGGCTCAATGAATTTCTCGTCAAGTCATTATAAGATTATG
CAAGGCTGGTCCTGCAACTCAGAAACAACAGACAATACAACATCAAATGG
GTGCATTGATATTAGTAGAACTTTTGAAAATGTGATGAACGAAAATATCA
ATCGAGTTGTGGGTGATATCAATACATCAAGAATTCTCCAATTTCAATCC
AAAGTTATGACTCCTAAGAAATGTAAGTTTCTTAGATAAATAGAACTAGA
TAATTATTTTCTTCATTAAACCGGACCATTAATCCAGGCCTAACAGTTTC
ATTTTTCTTCTAAATCACCTTGTTTTTCACGAGTGTCATTATAACTGAAA
ATTATCTAATTTTGCACTGTTTATTATCTTGCCTTCATTATATAGCGAAC
ACTCCTGCATCACTTCGGCAAATACTACCTTCACCTTCCAAGCCAATTTC
TCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTCATATA
TTGACGACTACT Coding sequence (CDS) from alignment at sc0003854:178..1039- >TCONS_00043013 ID=TCONS_00043013|Name=TCONS_00043013|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0003854:178..1039- (Clytia hemisphaerica)
CGAACACTCCTGCATCACTTCGGCAAATACTACCTTCACCTTCCAAGCCA
ATTTCTCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTC
ATATATTGACGACTACACCCGGTATGTAAAAAATGTGAAAGTTGAAAAGC
TCTCCTTTTTATTACCATTTAGCAAAGTCAAAGAAAGCATGTCCTCACTC
GACCAAGAAGTTGAAAAATACATGAATACAGCAAGCAATGGAACACAGAT
AATAATGAAACCTGAAAAATCATTCTGTGGTTCAAGAAAGAGGCCAGCAT
CAACCCTGGGTTCCTCTAACACTGCTACAAATGAACCCAGAACACCACCC
AAACACCACTATTGCCCAAAAACACCAAAATCCATCAGTAAAAGTAATAG
AAAGAAAACACCTTCTAGCAAATATCGAACACCAACCAAAACACCAACAG
AAAGTGATCGTTTTATACCACCTCGAGGCTCAATGAATTTCTCGTCAAGT
CATTATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACAACAGACAA
TACAACATCAAATGGGTGCATTGATATTAGTAGAACTTTTGAAAATGTGA
TGAACGAAAATATCAATCGAGTTGTGGGTGATATCAATACATCAAGAATT
CTCCAATTTCAATCCAAAGTTATGACTCCTAAGAAATCGAACACTCCTGC
ATCACTTCGGCAAATACTACCTTCACCTTCCAAGCCAATTTCTCGCAAGA
TACAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTCATATATTGACGAC
TACACCCGGTATGTAAAAAATGTGAAAGTTGAAAAGCTCTCCTTTTTATT
ACCATTTAGCAAAGTCAAAGAAAGCATGTCCTCACTCGACCAAGAAGTTG
AAAAATACATGAATACAGCAAGCAATGGAACACAGATAATAATGAAACCT
GAAAAATCATTCTGTGGTTCAAGAAAGAGGCCAGCATCAACCCTGGGTTC
CTCTAACACTGCTACAAATGAACCCAGAACACCACCCAAACACCACTATT
GCCCAAAAACACCAAAATCCATCAGTAAAAGTAATAGAAAGAAAACACCT
TCTAGCAAATATCGAACACCAACCAAAACACCAACAGAAAGTGATCGTTT
TATACCACCTCGAGGCTCAATGAATTTCTCGTCAAGTCATTATAAGATTA
TGCAAGGCTGGTCCTGCAACTCAGAAACAACAGACAATACAACATCAAAT
GGGTGCATTGATATTAGTAGAACTTTTGAAAATGTGATGAACGAAAATAT
CAATCGAGTTGTGGGTGATATCAATACATCAAGAATTCTCCAATTTCAAT
CCAAAGTTATGACTCCTAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043013-exon-sc0003854-1575043694:468..1039 | TCONS_00043013-exon-sc0003854-1575043694:468..1039 | Clytia hemisphaerica | exon |
| TCONS_00043013-exon-sc0003854-1575043694:178..294 | TCONS_00043013-exon-sc0003854-1575043694:178..294 | Clytia hemisphaerica | exon |
| TCONS_00043013-exon-sc0003854-1510915933:468..1039 | TCONS_00043013-exon-sc0003854-1510915933:468..1039 | Clytia hemisphaerica | exon |
| TCONS_00043013-exon-sc0003854-1510915933:178..294 | TCONS_00043013-exon-sc0003854-1510915933:178..294 | Clytia hemisphaerica | exon |
| TCONS_00043013-exon-sc0003854-1491911889:468..1039 | TCONS_00043013-exon-sc0003854-1491911889:468..1039 | Clytia hemisphaerica | exon |
| TCONS_00043013-exon-sc0003854-1491911889:178..294 | TCONS_00043013-exon-sc0003854-1491911889:178..294 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003854 | supercontig | sc0003854:178..1039 - |
Blast
The following BLAST results are available for this feature:
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