TCONS_00043008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043008
Unique NameTCONS_00043008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043008 ID=TCONS_00043008|Name=TCONS_00043008|organism=Clytia hemisphaerica|type=transcript|length=774bp
atttattcaattattttgtGAATGCTGTTTTTCCCAATAAGAAGTAAGGG
GTGATCAATTTAATGCTAAATTTCTATTAGTTCAAAAAATAAATNtattt
attcaattattttgtGAATGCTGTTTTTCCCAATAAGAAGTAAGGGGTGA
TCAATTTAATGCTAAATTTCTATTagttcaaaaaataaatcatgaagTTA
GACACAAAGTTATCCAAGGAAATAGAAGAATCATTGAACCAAGGTGTCAC
TCTTGAAGATTGTGCTGCCctcttcaaaatcaaagaaaagaaacTCAAAT
TCAAAGAACAGCCCTTCAACACTAAGAAGTTGTTCTGGTTATCAAGCCTA
ATTGTTGTGTTATTGGCATTGAACAATCCAGAAGTCTATCAATCACCaaa
agacttcttggaaaggGTCAGGGATGATTATTTTTACTCATCAACGGACA
AATGTTTGGTTGGGATGTCTGCTCTTAGCATGGAGATGACCAGACCTGTC
TCTAATTGCAATATTTGTAGAGGAATTACTGAGGTATGATAATGAATTAT
TGTCGTAAAAACTTCTGACGTTTTGGTgactatttctatttctataaaTC
AATCCAAAGGGTACATATTATGTACATTTTCCCGGATAtactaaaaaatt
taaataaggcaaggtcaatttaatttgttgttttacgggccaagctgcCC
AAAAATTAGGGTCGGTCGGtaggcgaaaaaataaaaataaaagtagaatt
tcacctataaaatccACTGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00043008-protein

>TCONS_00043008-protein ID=TCONS_00043008-protein|Name=TCONS_00043008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MKLDTKLSKEIEESLNQGVTLEDCAALFKIKEKKLKFKEQPFNTKKLFWL
SSLIVVLLALNNPEVYQSPKDFLERVRDDYFYSSTDKCLVGMSALSMEMT
RPVSNCNICRGITEV
Run BLAST on NCBI

transcript from alignment at sc0003850:610..1383

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043008 ID=TCONS_00043008|Name=TCONS_00043008|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0003850:610..1383 (Clytia hemisphaerica)
CTTTTCAGTggattttataggtgaaattctacttttatttttattttttc
gcctaCCGACCGACCCTAATTTTTGGgcagcttggcccgtaaaacaacaa
attaaattgaccttgccttatttaaattttttagtaTATCCGGGAAAATG
TACATAATATGTACCCTTTGGATTGAtttatagaaatagaaatagtcACC
AAAACGTCAGAAGTTTTTACGACAATAATTCATTATCATACCTCAGTAAT
TCCTCTACAAATATTGCAATTAGAGACAGGTCTGGTCATCTCCATGCTAA
GAGCAGACATCCCAACCAAACATTTGTCCGTTGATGAGTAAAAATAATCA
TCCCTGACcctttccaagaagtcttttGGTGATTGATAGACTTCTGGATT
GTTCAATGCCAATAACACAACAATTAGGCTTGATAACCAGAACAACTTCT
TAGTGTTGAAGGGCTGTTCTTTGAATTTGAgtttcttttctttgattttg
aagagGGCAGCACAATCTTCAAGAGTGACACCTTGGTTCAATGATTCTTC
TATTTCCTTGGATAACTTTGTGTCTAActtcatgatttattttttgaact
AATAGAAATTTAGCATTAAATTGATCACCCCTTACTTCTTATTGGGAAAA
ACAGCATTCacaaaataattgaataaataNATTTATTTTTTGAACTAATA
GAAATTTAGCATTAAATTGATCACCCCTTACTTCTTATTGGGAAAAACAG
CATTCacaaaataattgaataaat

Coding sequence (CDS) from alignment at sc0003850:610..1383

>TCONS_00043008 ID=TCONS_00043008|Name=TCONS_00043008|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0003850:610..1383 (Clytia hemisphaerica)
TCATACCTCAGTAATTCCTCTACAAATATTGCAATTAGAGACAGGTCTGG
TCATCTCCATGCTAAGAGCAGACATCCCAACCAAACATTTGTCCGTTGAT
GAGTAAAAATAATCATCCCTGACcctttccaagaagtcttttGGTGATTG
ATAGACTTCTGGATTGTTCAATGCCAATAACACAACAATTAGGCTTGATA
ACCAGAACAACTTCTTAGTGTTGAAGGGCTGTTCTTTGAATTTGAgtttc
ttttctttgattttgaagagGGCAGCACAATCTTCAAGAGTGACACCTTG
GTTCAATGATTCTTCTATTTCCTTGGATAACTTTGTGTCTAActtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026759XLOC_026759Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043008-proteinTCONS_00043008-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043008-exon-sc0003850-1491911889:610..1383TCONS_00043008-exon-sc0003850-1491911889:610..1383Clytia hemisphaericaexon
TCONS_00043008-exon-sc0003850-1510915933:610..1383TCONS_00043008-exon-sc0003850-1510915933:610..1383Clytia hemisphaericaexon
TCONS_00043008-exon-sc0003850-1575043694:610..1383TCONS_00043008-exon-sc0003850-1575043694:610..1383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003850supercontigsc0003850:610..1383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.19324	5.38095	2.00489	1.38741	7.24632	6.79894	7.05107	8.72785	5.23508	6.58904	7.88831	5.36949	9.78483	8.37225	10.735	10.618	8.55424	10.0286	12.7938	17.0714	7.05619	8.27843	8.38899	11.9546	6.13323	8.47084	5.29089	2.72367	12.0969	10.9679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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