TCONS_00043005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043005
Unique NameTCONS_00043005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043005 ID=TCONS_00043005|Name=TCONS_00043005|organism=Clytia hemisphaerica|type=transcript|length=363bp
GGAAATTAAAGCGAAAGCTAACAGTATCGATTGGCATAATATACCAATGT
CTTTATTGCTTTGAGTACTCATCGACTGCAATTTCTGCTTTATATTActa
taaaaactctttcaataTCGAAAATCCTAAATTTTATTATGGATGCTCAA
TGGCAGCAATATTTCTCAGCGCTATCATTTCAAACTACATATGTGGACGA
GCAATGGATAAGACAAGAGATTTAAGGAAGATTGTATTGACTTTATCGTT
ATTCAACATTCTTGGTAATCTAACATATACACTGACTTGGTCGCCCTGGC
TTCCTGTTTTGGGCCGCTTTGTGTGCGGTATTGCAACTGGAATTGGTGCT
GCAGTTACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00043005-protein

>TCONS_00043005-protein ID=TCONS_00043005-protein|Name=TCONS_00043005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
KLKRKLTVSIGIIYQCLYCFEYSSTAISALYYYKNSFNIENPKFYYGCSM
AAIFLSAIISNYICGRAMDKTRDLRKIVLTLSLFNILGNLTYTLTWSPWL
PVLGRFVCGIATGIGAAVTG
Run BLAST on NCBI

transcript from alignment at sc0003849:871..1233

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043005 ID=TCONS_00043005|Name=TCONS_00043005|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0003849:871..1233 (Clytia hemisphaerica)
TACCTGTAACTGCAGCACCAATTCCAGTTGCAATACCGCACACAAAGCGG
CCCAAAACAGGAAGCCAGGGCGACCAAGTCAGTGTATATGTTAGATTACC
AAGAATGTTGAATAACGATAAAGTCAATACAATCTTCCTTAAATCTCTTG
TCTTATCCATTGCTCGTCCACATATGTAGTTTGAAATGATAGCGCTGAGA
AATATTGCTGCCATTGAGCATCCATAATAAAATTTAGGATTTTCGAtatt
gaaagagtttttatagTAATATAAAGCAGAAATTGCAGTCGATGAGTACT
CAAAGCAATAAAGACATTGGTATATTATGCCAATCGATACTGTTAGCTTT
CGCTTTAATTTCC

Coding sequence (CDS) from alignment at sc0003849:871..1233

>TCONS_00043005 ID=TCONS_00043005|Name=TCONS_00043005|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0003849:871..1233 (Clytia hemisphaerica)
ACCTGTAACTGCAGCACCAATTCCAGTTGCAATACCGCACACAAAGCGGC
CCAAAACAGGAAGCCAGGGCGACCAAGTCAGTGTATATGTTAGATTACCA
AGAATGTTGAATAACGATAAAGTCAATACAATCTTCCTTAAATCTCTTGT
CTTATCCATTGCTCGTCCACATATGTAGTTTGAAATGATAGCGCTGAGAA
ATATTGCTGCCATTGAGCATCCATAATAAAATTTAGGATTTTCGAtattg
aaagagtttttatagTAATATAAAGCAGAAATTGCAGTCGATGAGTACTC
AAAGCAATAAAGACATTGGTATATTATGCCAATCGATACTGTTAGCTTTC
GCTTTAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026756XLOC_026756Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043005-proteinTCONS_00043005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043005-exon-sc0003849-1491911889:871..1233TCONS_00043005-exon-sc0003849-1491911889:871..1233Clytia hemisphaericaexon
TCONS_00043005-exon-sc0003849-1510915933:871..1233TCONS_00043005-exon-sc0003849-1510915933:871..1233Clytia hemisphaericaexon
TCONS_00043005-exon-sc0003849-1575043694:871..1233TCONS_00043005-exon-sc0003849-1575043694:871..1233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003849supercontigsc0003849:871..1233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.49365	4.7063	0	1.58859	0	0	0	0	0	0.950486	0.233401	0	0.600051	1.76966	0.634737	0.902757	0	0.21176	1.09968	0.256264	0.445479	1.50519	2.77842	3.50491	1.23672	0.882992	4.74683	3.21363	1.32759	2.03143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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