TCONS_00043002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043002
Unique NameTCONS_00043002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043002 ID=TCONS_00043002|Name=TCONS_00043002|organism=Clytia hemisphaerica|type=transcript|length=688bp
TTCACTGAACAAACTAAAAAGCTTCGAATAGTTTGAATAATTCTCATAAG
AAAATCGATGTAATCGCATCGATAACACATGGGACGAAGGTGAATGAAAA
CATGAGTAAATTGTTTATAAatgcaaaatatgaaaattattcAGTATCAG
TATTACAGTAAATGAAGTAATGTTATAAGACGAGATATTTCAGCTGCTTT
CAGGGGACCACGTTAGTCCACAGTTTCCGTAAACAATAGTTTAACAATAA
TTTGTAAGTCAGTATTTTCAAGTCAGCCTCTCGCCCCATAACGTACACAT
TCACATTAAGTTGTTTACAAAagtattgattaaaaaaaaattaaatagtt
TCATATCCCATATATGGAAAGTACACATAAAGAAGCTTTTCCTGTGCTTA
GATTACGTAAAGTGCCTGGTCATATTCAATTAGATTTTATACGGTATGTT
TCTTTGATAGCTGTTTTGTAgttatcatattttcaaagttcaaagttCTA
AAAGGAAGTTTAGAGGGATAATGCCTTCTCAATTTTTTCGATTCTCAACT
CCCTCTCCATTGTATCTTTACGAGAGGAGGGGACACGTTTGGCTTGAGGT
TGTTTGCCAGCTCTTATTGCTCCGCCATTTTTGCAATCACATTGAGTACC
TATAAAGAACAAAACAAGTTAAAGGCAATGATCTAAAT
Run BLAST on NCBI

transcript from alignment at sc0003843:141..828

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043002 ID=TCONS_00043002|Name=TCONS_00043002|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0003843:141..828 (Clytia hemisphaerica)
ATTTAGATCATTGCCTTTAACTTGTTTTGTTCTTTATAGGTACTCAATGT
GATTGCAAAAATGGCGGAGCAATAAGAGCTGGCAAACAACCTCAAGCCAA
ACGTGTCCCCTCCTCTCGTAAAGATACAATGGAGAGGGAGTTGAGAATCG
AAAAAATTGAGAAGGCATTATCCCTCTAAACTTCCTTTTAGaactttgaa
ctttgaaaatatgataacTACAAAACAGCTATCAAAGAAACATACCGTAT
AAAATCTAATTGAATATGACCAGGCACTTTACGTAATCTAAGCACAGGAA
AAGCTTCTTTATGTGTACTTTCCATATATGGGATATGAaactatttaatt
tttttttaatcaatactTTTGTAAACAACTTAATGTGAATGTGTACGTTA
TGGGGCGAGAGGCTGACTTGAAAATACTGACTTACAAATTATTGTTAAAC
TATTGTTTACGGAAACTGTGGACTAACGTGGTCCCCTGAAAGCAGCTGAA
ATATCTCGTCTTATAACATTACTTCATTTACTGTAATACTGATACTgaat
aattttcatattttgcatTTATAAACAATTTACTCATGTTTTCATTCACC
TTCGTCCCATGTGTTATCGATGCGATTACATCGATTTTCTTATGAGAATT
ATTCAAACTATTCGAAGCTTTTTAGTTTGTTCAGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026753XLOC_026753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043002-exon-sc0003843-1491911889:141..828TCONS_00043002-exon-sc0003843-1491911889:141..828Clytia hemisphaericaexon
TCONS_00043002-exon-sc0003843-1510915933:141..828TCONS_00043002-exon-sc0003843-1510915933:141..828Clytia hemisphaericaexon
TCONS_00043002-exon-sc0003843-1575043694:141..828TCONS_00043002-exon-sc0003843-1575043694:141..828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003843supercontigsc0003843:141..828 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.17391	2.75426	2.4657	3.51356	0.39953	0.947142	1.11447	1.24806	0.848868	0.463861	0.32453	0.52175	33.5109	29.3534	76.506	108.796	4.55725	12.6139	397.607	206.2	0.143223	0	2.60132	1.45587	2.86278	3.65957	1.13662	1.08387	1.19549	0.883168
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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