TCONS_00042993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042993
Unique NameTCONS_00042993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042993 ID=TCONS_00042993|Name=TCONS_00042993|organism=Clytia hemisphaerica|type=transcript|length=320bp
TATCCACTCTCGTCCATGTTATAAACTCTTCACGTCAATCTTAGGAGATA
AACGATACTCAACAGAAAAATCTAAAGAACCGAGTCGTAAGTCACCGCGA
TTTTCAAATCCTGAGCAAGAACGAGCGTTAGAATTCACTCCGAACAGGCT
ATTTCCAAATCTCTGTCAATTATGTGgcaaaaaacaaattcaacGTAAAA
AGAAGAGATACGAGCCTTACAAAATTACCACTAAAAACTCTGAAGCAGCG
ATCAAATCCACAGCAAAAGCCAAAAACGAACCAATGTACTACAAAATTGC
CCACTTAGATATCGTCGCGA
Run BLAST on NCBI

protein sequence of TCONS_00042993-protein

>TCONS_00042993-protein ID=TCONS_00042993-protein|Name=TCONS_00042993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
IHSRPCYKLFTSILGDKRYSTEKSKEPSRKSPRFSNPEQERALEFTPNRL
FPNLCQLCGKKQIQRKKKRYEPYKITTKNSEAAIKSTAKAKNEPMYYKIA
HLDIVA
Run BLAST on NCBI

transcript from alignment at sc0003836:8757..9240+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042993 ID=TCONS_00042993|Name=TCONS_00042993|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at sc0003836:8757..9240+ (Clytia hemisphaerica)
TATCCACTCTCGTCCATGTTATAAACTGTAAGTGAATTTAATTTAAGAAT
GACTatcggaaaaataaaaatatttggctCACTCGCAAGTGTATTTGACT
CACAGGGCGATTTTTTAGTTTTACGTTTGGTTTAAATGAAAGCAATTAAA
TGCCATATCCAACTAACGCATCGCTCCTTTTTTCGTTTCAGCTTCACGTC
AATCTTAGGAGATAAACGATACTCAACAGAAAAATCTAAAGAACCGAGTC
GTAAGTCACCGCGATTTTCAAATCCTGAGCAAGAACGAGCGTTAGAATTC
ACTCCGAACAGGCTATTTCCAAATCTCTGTCAATTATGTGgcaaaaaaca
aattcaacGTAAAAAGAAGAGATACGAGCCTTACAAAATTACCACTAAAA
ACTCTGAAGCAGCGATCAAATCCACAGCAAAAGCCAAAAACGAACCAATG
TACTACAAAATTGCCCACTTAGATATCGTCGCGA

Coding sequence (CDS) from alignment at sc0003836:8757..9240+

>TCONS_00042993 ID=TCONS_00042993|Name=TCONS_00042993|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0003836:8757..9240+ (Clytia hemisphaerica)
ATCCACTCTCGTCCATGTTATAAACTCTTCACGTCAATCTTAGGAGATAA
ACGATACTCAACAGAAAAATCTAAAGAACCGAGTCGTAAGTCACCGCGAT
TTTCAAATCCTGAGCAAGAACGAGCGTTAGAATTCACTCCGAACAGGCTA
TTTCCAAATCTCTGTCAATTATGTGgcaaaaaacaaattcaacGTAAAAA
GAAGAGATACGAGCCTTACAAAATTACCACTAAAAACTCTGAAGCAGCGA
TCAAATCCACAGCAAAAGCCAAAAACGAACCAATGTACTACAAAATTGCC
CACTTAGATATCGTCGCGATCCACTCTCGTCCATGTTATAAACTCTTCAC
GTCAATCTTAGGAGATAAACGATACTCAACAGAAAAATCTAAAGAACCGA
GTCGTAAGTCACCGCGATTTTCAAATCCTGAGCAAGAACGAGCGTTAGAA
TTCACTCCGAACAGGCTATTTCCAAATCTCTGTCAATTATGTGgcaaaaa
acaaattcaacGTAAAAAGAAGAGATACGAGCCTTACAAAATTACCACTA
AAAACTCTGAAGCAGCGATCAAATCCACAGCAAAAGCCAAAAACGAACCA
ATGTACTACAAAATTGCCCACTTAGATATCGTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026744XLOC_026744Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042993-proteinTCONS_00042993-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042993-exon-sc0003836-1491911889:8757..8783TCONS_00042993-exon-sc0003836-1491911889:8757..8783Clytia hemisphaericaexon
TCONS_00042993-exon-sc0003836-1510915933:8757..8783TCONS_00042993-exon-sc0003836-1510915933:8757..8783Clytia hemisphaericaexon
TCONS_00042993-exon-sc0003836-1575043694:8757..8783TCONS_00042993-exon-sc0003836-1575043694:8757..8783Clytia hemisphaericaexon
TCONS_00042993-exon-sc0003836-1491911889:8948..9240TCONS_00042993-exon-sc0003836-1491911889:8948..9240Clytia hemisphaericaexon
TCONS_00042993-exon-sc0003836-1510915933:8948..9240TCONS_00042993-exon-sc0003836-1510915933:8948..9240Clytia hemisphaericaexon
TCONS_00042993-exon-sc0003836-1575043694:8948..9240TCONS_00042993-exon-sc0003836-1575043694:8948..9240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003836supercontigsc0003836:8757..9240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594954	0.603508	0.899501	0.55614	4.63576	2.3271	1.79685	2.85799	0.538608	2.46088	0.647555	0.320256	0.812517	1.53919	1.10719	1.42788	0.53213	0.491795	2.52337	1.06648	2.16175	0.47918	0.366424	0.652192	1.16847	1.2249	1.3512	1.43408	0.757591	0.809813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top