|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042985 ID=TCONS_00042985|Name=TCONS_00042985|organism=Clytia hemisphaerica|type=transcript|length=599bp
GAAGTGCATGAGAAATCTCAGCATCAAGAATGCAACATTCATCTTCCAAC
ATATTGAAGAATTTTAGGTCACTTCCTGCATTTCGGAAATCTTGAAGATC
ATTTTTCATTTGCTCCAAAGTTCGTGGCTGACAAGAACGCTGATCTGGAG
GaagttgaatttctttttttgttgcaaTGCAAAATAAACATGGATGTCGT
CCTGAAGAGAGAAATGGGTCCTAATAATAATCTGCTGACTGCATtaagAT
CTACCTTGCTATTATGGGACTGGAATTACCAACACCCCGTTAAACTCACC
TGATGATAGAGTCTAAACGACCAAGCAAATGCTCCttgaaattttccata
aatGCCCAGCCAGAAGAACCCACGATGAACTTTCCTTTCTCTTCTTGACA
TGGAAAGGTGAATGGTGCCAAGATTCCTTTGACAACAGCATTCTCGATTC
GTTTCATCGTCTGACGTTGCTTTGCTTCGCTTTCTGGTTTGATGTTGAAA
CTTCTTAGCCAGCTGTAAATGTGTAATATATACAGATACTTGTgataatt
tattcaaaatttttattgtatACCATTGTATCGATCCAATATTAAATTN Run BLAST on NCBI transcript from alignment at sc0003833:4728..6403+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042985 ID=TCONS_00042985|Name=TCONS_00042985|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at sc0003833:4728..6403+ (Clytia hemisphaerica)
GAAGTGCATGAGAAATCTCAGCATCAAGAATGCAACATTCATCTTCCAAC
ATATTGAAGAATTTTAGGTAAGATCCTAACGAGATGTGCAAACCAGGTAT
TGCAATCtaagataaaaataattttaattacCTACTTAAAtattacactt
atataactaCTCATGTTATTAACGTGAATTGGTCAACCTTGCGTTGATTA
TAACTGTTTAACAAAATTTGAGCTAaggtaattttttgaaaacccTGCCT
TTCGTGTTAATTAATTGTCACACTCATTTTTCCTGCATTGAATACTTGAT
TAGTTATATAAGTGTTAAGGTAGTAAACTGTAATCGAATTTTCTTAACGC
ATTGTTAAAAGAGTTTACCACTTTGACTCTTGGTGAGGAGATCTACCAAA
TCTATTTTTAATGATATTTACCTGGTCGATTGGGATCAAGAAAAGGGGAT
CGTCAATAACATTATTGAACTCCTTTGCTCTTTTCAGGTCACTTCCTGCA
TTTCGGAAATCTTGAAGATCATTTTTCATTTGCTCCAAAGTTCGTGGCTG
ACAAGAACGCTGATCTGGAGGaagttgaatttctttttttgttgcaaTGC
AAAATAAACATGGATGTCGTCCTGAAGAGAGAAATGGGTCCTAATAATAA
TCTGCTGACTGCATtaaggtaaaaaaatttttctcttccAAAGAATTTTA
ACACCTGCAACTTACCACTTGCTCCTGTAATACCATAGATTTTGCACAAG
TATTCGTAGTCACCGCACATAAACACTCTGATGCAACGATCCCTGGATTA
AAAAAAGTTACTATTAAGTACTTTTGTTTGGACAAGTAGCTTAAGTGTTT
ATCGATTGGCTGTCCTTGCTAATTTGAAATCATTCAGGTATTTTTGGGCA
TATGCTACATCATTAGACCCCTCTCCCTAATCACACACACACATGCAGAA
CTGTTGTCAATTAATTTTACTTTGGTATTAATCAAACAATTTTACCCAAT
CTTTGCCATGTTCAAACTATTGACATCCTTTGACAATTGCATTGTGGCTA
TTTCAAGATTGCTTCTGATGTCCTTTGCCTCAAAGGTGTTCATGACAATT
GTCTTGTTTATGCTGTTAGGCTTTGGTAGATTTGCGATTTGGTATGCAAA
CTTGAAAGAAGCACCACCATGGTCACCTCCAACTTTGAGATGAATTTCTT
GTTCCATTGGCTCTGTATggtttttcaacattttggccctgaaaaaataa
aagtgtttaattttaagcattttgttttaatttttagcattttgttttaa
ttttagcattttgtttTCGTTTTAGATCTACCTTGCTATTATGGGACTGG
AATTACCAACACCCCGTTAAACTCACCTGATGATAGAGTCTAAACGACCA
AGCAAATGCTCCttgaaattttccataaatGCCCAGCCAGAAGAACCCAC
GATGAACTTTCCTTTCTCTTCTTGACATGGAAAGGTGAATGGTGCCAAGA
TTCCTTTGACAACAGCATTCTCGATTCGTTTCATCGTCTGACGTTGCTTT
GCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTAGCCAGCTGTAAATGTG
TAATATATACAGATACTTGTgataatttattcaaaatttttattgtatAC
CATTGTATCGATCCAATATTAAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042985-exon-sc0003833-1491911889:4728..4794 | TCONS_00042985-exon-sc0003833-1491911889:4728..4794 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1510915933:4728..4794 | TCONS_00042985-exon-sc0003833-1510915933:4728..4794 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1575043694:4728..4794 | TCONS_00042985-exon-sc0003833-1575043694:4728..4794 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1491911889:5215..5395 | TCONS_00042985-exon-sc0003833-1491911889:5215..5395 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1510915933:5215..5395 | TCONS_00042985-exon-sc0003833-1510915933:5215..5395 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1575043694:5215..5395 | TCONS_00042985-exon-sc0003833-1575043694:5215..5395 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1491911889:6053..6403 | TCONS_00042985-exon-sc0003833-1491911889:6053..6403 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1510915933:6053..6403 | TCONS_00042985-exon-sc0003833-1510915933:6053..6403 | Clytia hemisphaerica | exon |
| TCONS_00042985-exon-sc0003833-1575043694:6053..6403 | TCONS_00042985-exon-sc0003833-1575043694:6053..6403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003833 | supercontig | sc0003833:4728..6403 + |
Blast
The following BLAST results are available for this feature:
|
