TCONS_00042984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042984
Unique NameTCONS_00042984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042984 ID=TCONS_00042984|Name=TCONS_00042984|organism=Clytia hemisphaerica|type=transcript|length=814bp
CTTCCAATTCGTTTTTCCACCCCTTTCATTGCAGCATGTCTCCTATGACA
CACAGAGTATAACGAGAAGAGATGCTTAAATTTGGTGGCAATATCAATTG
CTTTTTGATGAATGTTACATCTAACAAATCCCAAATTGTAAACGTACTTT
GGAATCCGATTGCAAAGTTTCACTATGGACGTAGTCTGTAAAGAGAAGtt
tttcgcTTGATCCACCAAGTGCATGAGAAATCTCAGCATCAAGAATGCAA
CATTCATCTTCCAACATATTGAAGAATTTTAGGTCACTTCCTGCATTTCG
GAAATCTTGAAGATCATTTTTCATTTGCTCCAAAGTTCGTGGCTGACAAG
AACGCTGATCTGGAGGaagttgaatttctttttttgttgcaaTGCAAAAT
AAACATGGATGTCGTCCTGAAGAGAGAAATGGGTCCTAATAATAATCTGC
TGACTGCATtaagATCTACCTTGCTATTATGGGACTGGAATTACCAACAC
CCCGTTAAACTCACCTGATGATAGAGTCTAAACGACCAAGCAAATGCTCC
ttgaaattttccataaatGCCCAGCCAGAAGAACCCACGATGAACTTTCC
TTTCTCTTCTTGACATGGAAAGGTGAATGGTGCCAAGATTCCTTTGACAA
CAGCATTCTCGATTCGTTTCATCGTCTGACGTTGCTTTGCTTCGCTTTCT
GGTTTGATGTTGAAACTTCTTAGCCAGCTGTAAATGTGTAATATATACAG
ATACTTGTgataatttattcaaaatttttattgtatACCATTGTATCGAT
CCAATATTAAATTN
Run BLAST on NCBI

transcript from alignment at sc0003833:365..6403+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042984 ID=TCONS_00042984|Name=TCONS_00042984|organism=Clytia hemisphaerica|type=transcript|length=6039bp|location=Sequence derived from alignment at sc0003833:365..6403+ (Clytia hemisphaerica)
CTTCCAATTCGTTTTTCCACCCCTTTCATTGCAGCATGTCTCCTGTAAGA
GGCGTTAAATTCTCTGTGTAGACTTTCAATGCCTTGTTCCCCATAAATTC
CACTTCCTGTTTGCCAGCGACGAATAAATGGAACAGTGATCCTCCATCAT
GTGTAGTTTTGGTGTAATTGAGCAAAGAGGGAATGTTTCCCAGATGTAGG
TCATCAACTTGGAGATGGATAATtctgaaatcaaaatattctaATATCAA
ACTATTGAGTATTTGAAAAGGTCTCCCCTTGGCGGGAACTGAGAATTTAA
ATTATCGAAAGAgttcaataataaatttttaattagCAGGAGTCTGCTGT
GCCAATTTCACTGTACTAGTACTGTATCAATCACTCCAATCTCTCAAGAT
AATTTTTATGTTAGTATTTTAAGATTCTCAAAACAAAGTAAATCAAGCCA
ATAATGgattaaaaatgaattttttttaaatatattctaATGATTCAGCT
CACCAAGTCTATGTATCCGAGattcttctttaaaaattgtCTTTCCGTTC
ATTTGTAGATGACACACAGAGTATAACGAGAAGAGATGCTTAAATTTGGT
GGCAATATCAATTGCTTTTTGATGAATGTTACATCTAACAAATCCCAAAT
TGTAAACGTACTTTGGAATCCGATTGCAAAGTTTCACTATGGACGTAGTC
TGTAAAGAGAAGgtaataatttttcattctATCATCTTTTGCAAGTCTGA
TTTTGGAATGTTCTTGAGGGCTGAGTTGAATTTGATCAAATAACTAGACT
GCATGATTTTTGTATACAAATTTCTTACCTTCAACATAGTATGGACATGG
TTTCCTACAAAGCTCTTCCCATGATAGTTCTGGCGACAAACGTTAAATGA
CTTGATGACATTATCCAACTCCTTTGATAGAGAACTTTTGCCTTATTCCG
ATTTAGGGTACCAGCAATGTTGTTGTTCAACAGCTCATCTAATTCCTTTT
GCTATAAATAATGGATAaggaaaaattaattcaaaataaatcGTGCCTTT
GTAATTTAACTAAAGctttaagaaaatatatttacgcaagttttttgaat
tttttttacctttttctcCTTCTTGTTCCTGAAAAATTCTTCTCTGGGGA
GTACACCTTTTTGATGCACTCCTCATTGTCTGGATTTTTGGTTATCTCTC
TGCGTATTGCACTATTTATCATTTCGATCATTTCGTTTTGAGCTTCAATG
GAGTCTTCaagctttcttttgttttggataTATCTCTTAATATCGGCCAT
ACTTtggtttttcagtttttcgcTTGATCCACCAAGTGCATGAGAAATCT
CAGCATCAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTTTAGG
TAAGATCCTAACGAGATGTGCAAACNAAAATGTTTGACTCTTTTGTTTTT
CTACACTCAGGTCGTGATGTTGTATATCATAACCTAAACTCCACGAAACC
ATTTCTCGTCAAGTAAATCAAGGGTAAGTAAGGAAATTATCTGCTTATTT
GTAttctactttttttaaaagaactataAGCTAGNNNNNNNNNNNNNNNN
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NNNATTGATCCACGAAGTGCATGAGAAATCTCAGCATCAAGAATGCAACA
TTCATCTTCCAACATATTGAAGAATTTTAGGTAAGATCCTAACGAGATGT
GCAAACCAGGTATTGCAATCtaagataaaaataattttaattacCTACTT
AAAtattacacttatataactaCTCATGTTATTAACGTGAATTGGTCAAC
CTTGCGTTGATTATAACTGTTTAACAAAATTTGAGCTAaggtaatttttt
gaaaacccTGCCTTTCGTGTTAATTAATTGTCACACTCATTTTTCCTGCA
TTGAATACTTGATTAGTTATATAAGTGTTAAGGTAGTAAACTGTAATCGA
ATTTTCTTAACGCATTGTTAAAAGAGTTTACCACTTTGACTCTTGGTGAG
GAGATCTACCAAATCTATTTTTAATGATATTTACCTGGTCGATTGGGATC
AAGAAAAGGGGATCGTCAATAACATTATTGAACTCCTTTGCTCTTTTCAG
GTCACTTCCTGCATTTCGGAAATCTTGAAGATCATTTTTCATTTGCTCCA
AAGTTCGTGGCTGACAAGAACGCTGATCTGGAGGaagttgaatttctttt
tttgttgcaaTGCAAAATAAACATGGATGTCGTCCTGAAGAGAGAAATGG
GTCCTAATAATAATCTGCTGACTGCATtaaggtaaaaaaatttttctctt
ccAAAGAATTTTAACACCTGCAACTTACCACTTGCTCCTGTAATACCATA
GATTTTGCACAAGTATTCGTAGTCACCGCACATAAACACTCTGATGCAAC
GATCCCTGGATTAAAAAAAGTTACTATTAAGTACTTTTGTTTGGACAAGT
AGCTTAAGTGTTTATCGATTGGCTGTCCTTGCTAATTTGAAATCATTCAG
GTATTTTTGGGCATATGCTACATCATTAGACCCCTCTCCCTAATCACACA
CACACATGCAGAACTGTTGTCAATTAATTTTACTTTGGTATTAATCAAAC
AATTTTACCCAATCTTTGCCATGTTCAAACTATTGACATCCTTTGACAAT
TGCATTGTGGCTATTTCAAGATTGCTTCTGATGTCCTTTGCCTCAAAGGT
GTTCATGACAATTGTCTTGTTTATGCTGTTAGGCTTTGGTAGATTTGCGA
TTTGGTATGCAAACTTGAAAGAAGCACCACCATGGTCACCTCCAACTTTG
AGATGAATTTCTTGTTCCATTGGCTCTGTATggtttttcaacattttggc
cctgaaaaaataaaagtgtttaattttaagcattttgttttaatttttag
cattttgttttaattttagcattttgtttTCGTTTTAGATCTACCTTGCT
ATTATGGGACTGGAATTACCAACACCCCGTTAAACTCACCTGATGATAGA
GTCTAAACGACCAAGCAAATGCTCCttgaaattttccataaatGCCCAGC
CAGAAGAACCCACGATGAACTTTCCTTTCTCTTCTTGACATGGAAAGGTG
AATGGTGCCAAGATTCCTTTGACAACAGCATTCTCGATTCGTTTCATCGT
CTGACGTTGCTTTGCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTAGCC
AGCTGTAAATGTGTAATATATACAGATACTTGTgataatttattcaaaat
ttttattgtatACCATTGTATCGATCCAATATTAAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026739XLOC_026739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042984-exon-sc0003833-1491911889:365..408TCONS_00042984-exon-sc0003833-1491911889:365..408Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1510915933:365..408TCONS_00042984-exon-sc0003833-1510915933:365..408Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1575043694:365..408TCONS_00042984-exon-sc0003833-1575043694:365..408Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1491911889:923..1076TCONS_00042984-exon-sc0003833-1491911889:923..1076Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1510915933:923..1076TCONS_00042984-exon-sc0003833-1510915933:923..1076Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1575043694:923..1076TCONS_00042984-exon-sc0003833-1575043694:923..1076Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1491911889:1680..1763TCONS_00042984-exon-sc0003833-1491911889:1680..1763Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1510915933:1680..1763TCONS_00042984-exon-sc0003833-1510915933:1680..1763Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1575043694:1680..1763TCONS_00042984-exon-sc0003833-1575043694:1680..1763Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1491911889:5215..5395TCONS_00042984-exon-sc0003833-1491911889:5215..5395Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1510915933:5215..5395TCONS_00042984-exon-sc0003833-1510915933:5215..5395Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1575043694:5215..5395TCONS_00042984-exon-sc0003833-1575043694:5215..5395Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1491911889:6053..6403TCONS_00042984-exon-sc0003833-1491911889:6053..6403Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1510915933:6053..6403TCONS_00042984-exon-sc0003833-1510915933:6053..6403Clytia hemisphaericaexon
TCONS_00042984-exon-sc0003833-1575043694:6053..6403TCONS_00042984-exon-sc0003833-1575043694:6053..6403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003833supercontigsc0003833:365..6403 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01824	3.14094	0.726414	0.827223	21.4425	17.6535	8.84311	10.4042	3.94942	6.47598	5.06428	1.8081	4.45016	4.20619	7.29052	7.9071	16.7169	15.7422	4.55939	3.74283	0	7.01247	2.9175	0.0625113	0.98011	2.26517	2.69902	2.67122	4.45385	0.980219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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