TCONS_00042983 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042983
Unique Name	TCONS_00042983
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1529

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003833:13..6403+

transcript sequence

>TCONS_00042983 ID=TCONS_00042983|Name=TCONS_00042983|organism=Clytia hemisphaerica|type=transcript|length=1529bp
GGAAACTTCAAAGAATCTTCTAAAGAAGGAATTACAgatgtatcattttt
ttataagaagttaTGGTTTCTAGAATATTTGACCTATTTCAGTGAAAACT
ACATGACACACAGAGTATAACGAGAAGAGATGCTTAAATTTGGTGGCAAT
ATCAATTGCTTTTTGATGAATGTTACATCTAACAAATCCCAAATTGTAAA
CGTACTTTGGAATCCGATTGCAAAGTTTCACTATGGACGTAGTCTGTAAA
GAGAAGtttttcgcTTGATCCACCAAGTGCATGAGAAATCTCAGCATCAA
GAATGCAACATTCATCTTCCAACATATTGAAGAATTTTAGGTCACTTCCT
GCATTTCGGAAATCTTGAAGATCATTTTTCATTTGCTCCAAAGTTCGTGG
CTGACAAGAACGCTGATCTGGAGGaagttgaatttctttttttgttgcaa
TGCAAAATAAACATGGATGTCGTCCTGAAGAGAGAAATGGGTCCTAATAA
TAATCTGCTGACTGCATtaaggtaaaaaaatttttctcttccAAAGAATT
TTAACACCTGCAACTTACCACTTGCTCCTGTAATACCATAGATTTTGCAC
AAGTATTCGTAGTCACCGCACATAAACACTCTGATGCAACGATCCCTGGA
TTAAAAAAAGTTACTATTAAGTACTTTTGTTTGGACAAGTAGCTTAAGTG
TTTATCGATTGGCTGTCCTTGCTAATTTGAAATCATTCAGGTATTTTTGG
GCATATGCTACATCATTAGACCCCTCTCCCTAATCACACACACACATGCA
GAACTGTTGTCAATTAATTTTACTTTGGTATTAATCAAACAATTTTACCC
AATCTTTGCCATGTTCAAACTATTGACATCCTTTGACAATTGCATTGTGG
CTATTTCAAGATTGCTTCTGATGTCCTTTGCCTCAAAGGTGTTCATGACA
ATTGTCTTGTTTATGCTGTTAGGCTTTGGTAGATTTGCGATTTGGTATGC
AAACTTGAAAGAAGCACCACCATGGTCACCTCCAACTTTGAGATGAATTT
CTTGTTCCATTGGCTCTGTATggtttttcaacattttggccctgaaaaaa
taaaagtgtttaattttaagcattttgttttaatttttagcattttgttt
taattttagcattttgtttTCGTTTTAGATCTACCTTGCTATTATGGGAC
TGGAATTACCAACACCCCGTTAAACTCACCTGATGATAGAGTCTAAACGA
CCAAGCAAATGCTCCttgaaattttccataaatGCCCAGCCAGAAGAACC
CACGATGAACTTTCCTTTCTCTTCTTGACATGGAAAGGTGAATGGTGCCA
AGATTCCTTTGACAACAGCATTCTCGATTCGTTTCATCGTCTGACGTTGC
TTTGCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTAGCCAGCTGTAAAT
GTGTAATATATACAGATACTTGTgataatttattcaaaatttttattgta
tACCATTGTATCGATCCAATATTAAATTN

Run BLAST on NCBI

transcript from alignment at sc0003833:13..6403+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042983 ID=TCONS_00042983|Name=TCONS_00042983|organism=Clytia hemisphaerica|type=transcript|length=6391bp|location=Sequence derived from alignment at sc0003833:13..6403+ (Clytia hemisphaerica)
GGAAACTTCAAAGAATCTTCTAAAGAAGGAATTACAgatgtatcattttt
ttataagaagttaTGGTTTCTAGAATATTTGACCTATTTCAGTGAAAACT
ACGTCAGTACTGTATATTACAATTTTCTCGTAAACTTCATTGAAAACCAC
CTTGAACTTTGTTATTTCTGACATTTTTAGCTACATTTTATGATTGAGAT
TTGCTAGACATTTAACATGaaggtttttgagaaaatgtattgaaaaatat
agttATCATTATTCTTCGTTGTCCTCCAACTTTCGTTTCTTTTGAAGGAC
ATAAAGAGATTGCAGTACTTCATTTCGCCCATTGATATGATTCGTCAAAA
TACTTCCAATTCGTTTTTCCACCCCTTTCATTGCAGCATGTCTCCTGTAA
GAGGCGTTAAATTCTCTGTGTAGACTTTCAATGCCTTGTTCCCCATAAAT
TCCACTTCCTGTTTGCCAGCGACGAATAAATGGAACAGTGATCCTCCATC
ATGTGTAGTTTTGGTGTAATTGAGCAAAGAGGGAATGTTTCCCAGATGTA
GGTCATCAACTTGGAGATGGATAATtctgaaatcaaaatattctaATATC
AAACTATTGAGTATTTGAAAAGGTCTCCCCTTGGCGGGAACTGAGAATTT
AAATTATCGAAAGAgttcaataataaatttttaattagCAGGAGTCTGCT
GTGCCAATTTCACTGTACTAGTACTGTATCAATCACTCCAATCTCTCAAG
ATAATTTTTATGTTAGTATTTTAAGATTCTCAAAACAAAGTAAATCAAGC
CAATAATGgattaaaaatgaattttttttaaatatattctaATGATTCAG
CTCACCAAGTCTATGTATCCGAGattcttctttaaaaattgtCTTTCCGT
TCATTTGTAGATGACACACAGAGTATAACGAGAAGAGATGCTTAAATTTG
GTGGCAATATCAATTGCTTTTTGATGAATGTTACATCTAACAAATCCCAA
ATTGTAAACGTACTTTGGAATCCGATTGCAAAGTTTCACTATGGACGTAG
TCTGTAAAGAGAAGgtaataatttttcattctATCATCTTTTGCAAGTCT
GATTTTGGAATGTTCTTGAGGGCTGAGTTGAATTTGATCAAATAACTAGA
CTGCATGATTTTTGTATACAAATTTCTTACCTTCAACATAGTATGGACAT
GGTTTCCTACAAAGCTCTTCCCATGATAGTTCTGGCGACAAACGTTAAAT
GACTTGATGACATTATCCAACTCCTTTGATAGAGAACTTTTGCCTTATTC
CGATTTAGGGTACCAGCAATGTTGTTGTTCAACAGCTCATCTAATTCCTT
TTGCTATAAATAATGGATAaggaaaaattaattcaaaataaatcGTGCCT
TTGTAATTTAACTAAAGctttaagaaaatatatttacgcaagttttttga
attttttttacctttttctcCTTCTTGTTCCTGAAAAATTCTTCTCTGGG
GAGTACACCTTTTTGATGCACTCCTCATTGTCTGGATTTTTGGTTATCTC
TCTGCGTATTGCACTATTTATCATTTCGATCATTTCGTTTTGAGCTTCAA
TGGAGTCTTCaagctttcttttgttttggataTATCTCTTAATATCGGCC
ATACTTtggtttttcagtttttcgcTTGATCCACCAAGTGCATGAGAAAT
CTCAGCATCAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTTTA
GGTAAGATCCTAACGAGATGTGCAAACNAAAATGTTTGACTCTTTTGTTT
TTCTACACTCAGGTCGTGATGTTGTATATCATAACCTAAACTCCACGAAA
CCATTTCTCGTCAAGTAAATCAAGGGTAAGTAAGGAAATTATCTGCTTAT
TTGTAttctactttttttaaaagaactataAGCTAGNNNNNNNNNNNNNN
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NNNNNATTGATCCACGAAGTGCATGAGAAATCTCAGCATCAAGAATGCAA
CATTCATCTTCCAACATATTGAAGAATTTTAGGTAAGATCCTAACGAGAT
GTGCAAACCAGGTATTGCAATCtaagataaaaataattttaattacCTAC
TTAAAtattacacttatataactaCTCATGTTATTAACGTGAATTGGTCA
ACCTTGCGTTGATTATAACTGTTTAACAAAATTTGAGCTAaggtaatttt
ttgaaaacccTGCCTTTCGTGTTAATTAATTGTCACACTCATTTTTCCTG
CATTGAATACTTGATTAGTTATATAAGTGTTAAGGTAGTAAACTGTAATC
GAATTTTCTTAACGCATTGTTAAAAGAGTTTACCACTTTGACTCTTGGTG
AGGAGATCTACCAAATCTATTTTTAATGATATTTACCTGGTCGATTGGGA
TCAAGAAAAGGGGATCGTCAATAACATTATTGAACTCCTTTGCTCTTTTC
AGGTCACTTCCTGCATTTCGGAAATCTTGAAGATCATTTTTCATTTGCTC
CAAAGTTCGTGGCTGACAAGAACGCTGATCTGGAGGaagttgaatttctt
tttttgttgcaaTGCAAAATAAACATGGATGTCGTCCTGAAGAGAGAAAT
GGGTCCTAATAATAATCTGCTGACTGCATtaaggtaaaaaaatttttctc
ttccAAAGAATTTTAACACCTGCAACTTACCACTTGCTCCTGTAATACCA
TAGATTTTGCACAAGTATTCGTAGTCACCGCACATAAACACTCTGATGCA
ACGATCCCTGGATTAAAAAAAGTTACTATTAAGTACTTTTGTTTGGACAA
GTAGCTTAAGTGTTTATCGATTGGCTGTCCTTGCTAATTTGAAATCATTC
AGGTATTTTTGGGCATATGCTACATCATTAGACCCCTCTCCCTAATCACA
CACACACATGCAGAACTGTTGTCAATTAATTTTACTTTGGTATTAATCAA
ACAATTTTACCCAATCTTTGCCATGTTCAAACTATTGACATCCTTTGACA
ATTGCATTGTGGCTATTTCAAGATTGCTTCTGATGTCCTTTGCCTCAAAG
GTGTTCATGACAATTGTCTTGTTTATGCTGTTAGGCTTTGGTAGATTTGC
GATTTGGTATGCAAACTTGAAAGAAGCACCACCATGGTCACCTCCAACTT
TGAGATGAATTTCTTGTTCCATTGGCTCTGTATggtttttcaacattttg
gccctgaaaaaataaaagtgtttaattttaagcattttgttttaattttt
agcattttgttttaattttagcattttgtttTCGTTTTAGATCTACCTTG
CTATTATGGGACTGGAATTACCAACACCCCGTTAAACTCACCTGATGATA
GAGTCTAAACGACCAAGCAAATGCTCCttgaaattttccataaatGCCCA
GCCAGAAGAACCCACGATGAACTTTCCTTTCTCTTCTTGACATGGAAAGG
TGAATGGTGCCAAGATTCCTTTGACAACAGCATTCTCGATTCGTTTCATC
GTCTGACGTTGCTTTGCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTAG
CCAGCTGTAAATGTGTAATATATACAGATACTTGTgataatttattcaaa
atttttattgtatACCATTGTATCGATCCAATATTAAATTN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026739	XLOC_026739	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00042983-exon-sc0003833-1491911889:13..114	TCONS_00042983-exon-sc0003833-1491911889:13..114	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1510915933:13..114	TCONS_00042983-exon-sc0003833-1510915933:13..114	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1575043694:13..114	TCONS_00042983-exon-sc0003833-1575043694:13..114	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1491911889:923..1076	TCONS_00042983-exon-sc0003833-1491911889:923..1076	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1510915933:923..1076	TCONS_00042983-exon-sc0003833-1510915933:923..1076	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1575043694:923..1076	TCONS_00042983-exon-sc0003833-1575043694:923..1076	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1491911889:1680..1763	TCONS_00042983-exon-sc0003833-1491911889:1680..1763	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1510915933:1680..1763	TCONS_00042983-exon-sc0003833-1510915933:1680..1763	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1575043694:1680..1763	TCONS_00042983-exon-sc0003833-1575043694:1680..1763	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1491911889:5215..6403	TCONS_00042983-exon-sc0003833-1491911889:5215..6403	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1510915933:5215..6403	TCONS_00042983-exon-sc0003833-1510915933:5215..6403	Clytia hemisphaerica	exon
TCONS_00042983-exon-sc0003833-1575043694:5215..6403	TCONS_00042983-exon-sc0003833-1575043694:5215..6403	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003833	supercontig	sc0003833:13..6403 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.25049e-07	2.53886e-05	1.05909	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00316193	0	0	0	0	0	0	0	0	0	0.122744	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042983 vs. Swiss-Prot (Human)

BLAST of TCONS_00042983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042983 (transcript) - C. hemisphaerica