TCONS_00042982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042982
Unique NameTCONS_00042982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042982 ID=TCONS_00042982|Name=TCONS_00042982|organism=Clytia hemisphaerica|type=transcript|length=883bp
ATTTTAACAGAGGAAACTTCAAAGAATCTTCTAAAGAAGGAATTACAgat
gtatcatttttttataagaagttaTGGTTTCTAGAATATTTGACCTATTT
CAGTGAAAACTACATGACACACAGAGTATAACGAGAAGAGATGCTTAAAT
TTGGTGGCAATATCAATTGCTTTTTGATGAATGTTACATCTAACAAATCC
CAAATTGTAAACGTACTTTGGAATCCGATTGCAAAGTTTCACTATGGACG
TAGTCTGTAAAGAGAAGtttttcgcTTGATCCACCAAGTGCATGAGAAAT
CTCAGCATCAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTTTA
GGTCACTTCCTGCATTTCGGAAATCTTGAAGATCATTTTTCATTTGCTCC
AAAGTTCGTGGCTGACAAGAACGCTGATCTGGAGGaagttgaatttcttt
ttttgttgcaaTGCAAAATAAACATGGATGTCGTCCTGAAGAGAGAAATG
GGTCCTAATAATAATCTGCTGACTGCATtaagATCTACCTTGCTATTATG
GGACTGGAATTACCAACACCCCGTTAAACTCACCTGATGATAGAGTCTAA
ACGACCAAGCAAATGCTCCttgaaattttccataaatGCCCAGCCAGAAG
AACCCACGATGAACTTTCCTTTCTCTTCTTGACATGGAAAGGTGAATGGT
GCCAAGATTCCTTTGACAACAGCATTCTCGATTCGTTTCATCGTCTGACG
TTGCTTTGCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTAGCCAGCTGT
AAATGTGTAATATATACAGATACTTGTgataatttattcaaaatttttat
tgtatACCATTGTATCGATCCAATATTAAATTN
Run BLAST on NCBI

transcript from alignment at sc0003833:2..6403+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042982 ID=TCONS_00042982|Name=TCONS_00042982|organism=Clytia hemisphaerica|type=transcript|length=6402bp|location=Sequence derived from alignment at sc0003833:2..6403+ (Clytia hemisphaerica)
ATTTTAACAGAGGAAACTTCAAAGAATCTTCTAAAGAAGGAATTACAgat
gtatcatttttttataagaagttaTGGTTTCTAGAATATTTGACCTATTT
CAGTGAAAACTACGTCAGTACTGTATATTACAATTTTCTCGTAAACTTCA
TTGAAAACCACCTTGAACTTTGTTATTTCTGACATTTTTAGCTACATTTT
ATGATTGAGATTTGCTAGACATTTAACATGaaggtttttgagaaaatgta
ttgaaaaatatagttATCATTATTCTTCGTTGTCCTCCAACTTTCGTTTC
TTTTGAAGGACATAAAGAGATTGCAGTACTTCATTTCGCCCATTGATATG
ATTCGTCAAAATACTTCCAATTCGTTTTTCCACCCCTTTCATTGCAGCAT
GTCTCCTGTAAGAGGCGTTAAATTCTCTGTGTAGACTTTCAATGCCTTGT
TCCCCATAAATTCCACTTCCTGTTTGCCAGCGACGAATAAATGGAACAGT
GATCCTCCATCATGTGTAGTTTTGGTGTAATTGAGCAAAGAGGGAATGTT
TCCCAGATGTAGGTCATCAACTTGGAGATGGATAATtctgaaatcaaaat
attctaATATCAAACTATTGAGTATTTGAAAAGGTCTCCCCTTGGCGGGA
ACTGAGAATTTAAATTATCGAAAGAgttcaataataaatttttaattagC
AGGAGTCTGCTGTGCCAATTTCACTGTACTAGTACTGTATCAATCACTCC
AATCTCTCAAGATAATTTTTATGTTAGTATTTTAAGATTCTCAAAACAAA
GTAAATCAAGCCAATAATGgattaaaaatgaattttttttaaatatattc
taATGATTCAGCTCACCAAGTCTATGTATCCGAGattcttctttaaaaat
tgtCTTTCCGTTCATTTGTAGATGACACACAGAGTATAACGAGAAGAGAT
GCTTAAATTTGGTGGCAATATCAATTGCTTTTTGATGAATGTTACATCTA
ACAAATCCCAAATTGTAAACGTACTTTGGAATCCGATTGCAAAGTTTCAC
TATGGACGTAGTCTGTAAAGAGAAGgtaataatttttcattctATCATCT
TTTGCAAGTCTGATTTTGGAATGTTCTTGAGGGCTGAGTTGAATTTGATC
AAATAACTAGACTGCATGATTTTTGTATACAAATTTCTTACCTTCAACAT
AGTATGGACATGGTTTCCTACAAAGCTCTTCCCATGATAGTTCTGGCGAC
AAACGTTAAATGACTTGATGACATTATCCAACTCCTTTGATAGAGAACTT
TTGCCTTATTCCGATTTAGGGTACCAGCAATGTTGTTGTTCAACAGCTCA
TCTAATTCCTTTTGCTATAAATAATGGATAaggaaaaattaattcaaaat
aaatcGTGCCTTTGTAATTTAACTAAAGctttaagaaaatatatttacgc
aagttttttgaattttttttacctttttctcCTTCTTGTTCCTGAAAAAT
TCTTCTCTGGGGAGTACACCTTTTTGATGCACTCCTCATTGTCTGGATTT
TTGGTTATCTCTCTGCGTATTGCACTATTTATCATTTCGATCATTTCGTT
TTGAGCTTCAATGGAGTCTTCaagctttcttttgttttggataTATCTCT
TAATATCGGCCATACTTtggtttttcagtttttcgcTTGATCCACCAAGT
GCATGAGAAATCTCAGCATCAAGAATGCAACATTCATCTTCCAACATATT
GAAGAATTTTAGGTAAGATCCTAACGAGATGTGCAAACNAAAATGTTTGA
CTCTTTTGTTTTTCTACACTCAGGTCGTGATGTTGTATATCATAACCTAA
ACTCCACGAAACCATTTCTCGTCAAGTAAATCAAGGGTAAGTAAGGAAAT
TATCTGCTTATTTGTAttctactttttttaaaagaactataAGCTAGNNN
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NNNNNNNNNNNNNNNNATTGATCCACGAAGTGCATGAGAAATCTCAGCAT
CAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTTTAGGTAAGAT
CCTAACGAGATGTGCAAACCAGGTATTGCAATCtaagataaaaataattt
taattacCTACTTAAAtattacacttatataactaCTCATGTTATTAACG
TGAATTGGTCAACCTTGCGTTGATTATAACTGTTTAACAAAATTTGAGCT
AaggtaattttttgaaaacccTGCCTTTCGTGTTAATTAATTGTCACACT
CATTTTTCCTGCATTGAATACTTGATTAGTTATATAAGTGTTAAGGTAGT
AAACTGTAATCGAATTTTCTTAACGCATTGTTAAAAGAGTTTACCACTTT
GACTCTTGGTGAGGAGATCTACCAAATCTATTTTTAATGATATTTACCTG
GTCGATTGGGATCAAGAAAAGGGGATCGTCAATAACATTATTGAACTCCT
TTGCTCTTTTCAGGTCACTTCCTGCATTTCGGAAATCTTGAAGATCATTT
TTCATTTGCTCCAAAGTTCGTGGCTGACAAGAACGCTGATCTGGAGGaag
ttgaatttctttttttgttgcaaTGCAAAATAAACATGGATGTCGTCCTG
AAGAGAGAAATGGGTCCTAATAATAATCTGCTGACTGCATtaaggtaaaa
aaatttttctcttccAAAGAATTTTAACACCTGCAACTTACCACTTGCTC
CTGTAATACCATAGATTTTGCACAAGTATTCGTAGTCACCGCACATAAAC
ACTCTGATGCAACGATCCCTGGATTAAAAAAAGTTACTATTAAGTACTTT
TGTTTGGACAAGTAGCTTAAGTGTTTATCGATTGGCTGTCCTTGCTAATT
TGAAATCATTCAGGTATTTTTGGGCATATGCTACATCATTAGACCCCTCT
CCCTAATCACACACACACATGCAGAACTGTTGTCAATTAATTTTACTTTG
GTATTAATCAAACAATTTTACCCAATCTTTGCCATGTTCAAACTATTGAC
ATCCTTTGACAATTGCATTGTGGCTATTTCAAGATTGCTTCTGATGTCCT
TTGCCTCAAAGGTGTTCATGACAATTGTCTTGTTTATGCTGTTAGGCTTT
GGTAGATTTGCGATTTGGTATGCAAACTTGAAAGAAGCACCACCATGGTC
ACCTCCAACTTTGAGATGAATTTCTTGTTCCATTGGCTCTGTATggtttt
tcaacattttggccctgaaaaaataaaagtgtttaattttaagcattttg
ttttaatttttagcattttgttttaattttagcattttgtttTCGTTTTA
GATCTACCTTGCTATTATGGGACTGGAATTACCAACACCCCGTTAAACTC
ACCTGATGATAGAGTCTAAACGACCAAGCAAATGCTCCttgaaattttcc
ataaatGCCCAGCCAGAAGAACCCACGATGAACTTTCCTTTCTCTTCTTG
ACATGGAAAGGTGAATGGTGCCAAGATTCCTTTGACAACAGCATTCTCGA
TTCGTTTCATCGTCTGACGTTGCTTTGCTTCGCTTTCTGGTTTGATGTTG
AAACTTCTTAGCCAGCTGTAAATGTGTAATATATACAGATACTTGTgata
atttattcaaaatttttattgtatACCATTGTATCGATCCAATATTAAAT
TN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026739XLOC_026739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042982-exon-sc0003833-1491911889:2..114TCONS_00042982-exon-sc0003833-1491911889:2..114Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1510915933:2..114TCONS_00042982-exon-sc0003833-1510915933:2..114Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1575043694:2..114TCONS_00042982-exon-sc0003833-1575043694:2..114Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1491911889:923..1076TCONS_00042982-exon-sc0003833-1491911889:923..1076Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1510915933:923..1076TCONS_00042982-exon-sc0003833-1510915933:923..1076Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1575043694:923..1076TCONS_00042982-exon-sc0003833-1575043694:923..1076Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1491911889:1680..1763TCONS_00042982-exon-sc0003833-1491911889:1680..1763Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1510915933:1680..1763TCONS_00042982-exon-sc0003833-1510915933:1680..1763Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1575043694:1680..1763TCONS_00042982-exon-sc0003833-1575043694:1680..1763Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1491911889:5215..5395TCONS_00042982-exon-sc0003833-1491911889:5215..5395Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1510915933:5215..5395TCONS_00042982-exon-sc0003833-1510915933:5215..5395Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1575043694:5215..5395TCONS_00042982-exon-sc0003833-1575043694:5215..5395Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1491911889:6053..6403TCONS_00042982-exon-sc0003833-1491911889:6053..6403Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1510915933:6053..6403TCONS_00042982-exon-sc0003833-1510915933:6053..6403Clytia hemisphaericaexon
TCONS_00042982-exon-sc0003833-1575043694:6053..6403TCONS_00042982-exon-sc0003833-1575043694:6053..6403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003833supercontigsc0003833:2..6403 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77935	0.152291	0	0	11.9509	10.4042	6.9768	8.4514	3.00563	8.05118	0.81843	5.00573	2.68947	4.14749	7.84562	14.6441	7.88013	6.52938	3.07025	4.91064	21.0426	20.9938	3.73059	7.96047	0.285309	1.20306	4.61318	1.30697	0	1.4968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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