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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042948 ID=TCONS_00042948|Name=TCONS_00042948|organism=Clytia hemisphaerica|type=transcript|length=835bp
CCTCTTGGTAAAACCACTTATTACGCCATCCGTGTCGAATTCCAAGTTCG
TGGTAGTCCTCACATTCATTCATTTCTTTGGATTTTGAATGCACCAGTAC
TAACTAAAGAAACAAAGGTAGAATACATAGAGTTTCTTGATAAGATAATC
AAAGTTAACTTACCATCTCAAGAAGAAGATCCTGATTTATTTAACCTTGT
AAAAACTTATCAATTACATCGCCATTCAAAAACATGTCGCAAATATAAAA
ACACTCCTTGCAGATTTAATTTTGGTAAATTCTTTTCTGAGAAAACAATA
GTATCTGAGCCGTTGCCACTAGAATTGCCGCATGAGGAAAAGGAAACCAT
ACTTGCATTGCGTAAAGAAGTCTTATCTAAAGTAAGAGATTATATTAACA
GCAACCTTAATCCAgacaaaagaaactttttcaacccaGATGAAGAAAAT
TACAATCCAGTTCCTAGCATAGATGAAGTACTGGCTCAATTAGATattcc
aaaaagtgaatatgAATATGCTCTCTCGGTGTCTGAAGATGAAGACTTTC
ATATTTACTTAAAGCGCGATACAAATGCATGTTTTGTAAACAACTACTTT
ACTGAAGGACTCAAAGCATGGCAGGCAAATCTAGATATTCAGCCAGTGTT
TAATTATTACAAAGCTGCAACTTATATGTGTGCATATCTTTCTAAAAGTG
AAGATGAAGTGTCACATGCCATGACTCAAGCTGTTCAAGACGCCTTTGAA
AACGGTGGTGATAAGTATGAGCAAATGAAATCTGTTGCGCACGCATATGT
TTCAAAGCGAGAAGTATCTGTGCAAGAAGCTGTNN Run BLAST on NCBI protein sequence of TCONS_00042948-protein >TCONS_00042948-protein ID=TCONS_00042948-protein|Name=TCONS_00042948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
PLGKTTYYAIRVEFQVRGSPHIHSFLWILNAPVLTKETKVEYIEFLDKII
KVNLPSQEEDPDLFNLVKTYQLHRHSKTCRKYKNTPCRFNFGKFFSEKTI
VSEPLPLELPHEEKETILALRKEVLSKVRDYINSNLNPDKRNFFNPDEEN
YNPVPSIDEVLAQLDIPKSEYEYALSVSEDEDFHIYLKRDTNACFVNNYF
TEGLKAWQANLDIQPVFNYYKAATYMCAYLSKSEDEVSHAMTQAVQDAFE
NGGDKYEQMKSVAHAYVSKREVSVQEAX Run BLAST on NCBI transcript from alignment at sc0003802:6498..7332 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042948 ID=TCONS_00042948|Name=TCONS_00042948|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at sc0003802:6498..7332 (Clytia hemisphaerica)
NNACAGCTTCTTGCACAGATACTTCTCGCTTTGAAACATATGCGTGCGCA
ACAGATTTCATTTGCTCATACTTATCACCACCGTTTTCAAAGGCGTCTTG
AACAGCTTGAGTCATGGCATGTGACACTTCATCTTCACTTTTAGAAAGAT
ATGCACACATATAAGTTGCAGCTTTGTAATAATTAAACACTGGCTGAATA
TCTAGATTTGCCTGCCATGCTTTGAGTCCTTCAGTAAAGTAGTTGTTTAC
AAAACATGCATTTGTATCGCGCTTTAAGTAAATATGAAAGTCTTCATCTT
CAGACACCGAGAGAGCATATTcatattcactttttggaatATCTAATTGA
GCCAGTACTTCATCTATGCTAGGAACTGGATTGTAATTTTCTTCATCtgg
gttgaaaaagtttcttttgtcTGGATTAAGGTTGCTGTTAATATAATCTC
TTACTTTAGATAAGACTTCTTTACGCAATGCAAGTATGGTTTCCTTTTCC
TCATGCGGCAATTCTAGTGGCAACGGCTCAGATACTATTGTTTTCTCAGA
AAAGAATTTACCAAAATTAAATCTGCAAGGAGTGTTTTTATATTTGCGAC
ATGTTTTTGAATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAA
TCAGGATCTTCTTCTTGAGATGGTAAGTTAACTTTGATTATCTTATCAAG
AAACTCTATGTATTCTACCTTTGTTTCTTTAGTTAGTACTGGTGCATTCA
AAATCCAAAGAAATGAATGAATGTGAGGACTACCACGAACTTGGAATTCG
ACACGGATGGCGTAATAAGTGGTTTTACCAAGAGG Coding sequence (CDS) from alignment at sc0003802:6498..7332 >TCONS_00042948 ID=TCONS_00042948|Name=TCONS_00042948|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0003802:6498..7332 (Clytia hemisphaerica)
NACAGCTTCTTGCACAGATACTTCTCGCTTTGAAACATATGCGTGCGCAA
CAGATTTCATTTGCTCATACTTATCACCACCGTTTTCAAAGGCGTCTTGA
ACAGCTTGAGTCATGGCATGTGACACTTCATCTTCACTTTTAGAAAGATA
TGCACACATATAAGTTGCAGCTTTGTAATAATTAAACACTGGCTGAATAT
CTAGATTTGCCTGCCATGCTTTGAGTCCTTCAGTAAAGTAGTTGTTTACA
AAACATGCATTTGTATCGCGCTTTAAGTAAATATGAAAGTCTTCATCTTC
AGACACCGAGAGAGCATATTcatattcactttttggaatATCTAATTGAG
CCAGTACTTCATCTATGCTAGGAACTGGATTGTAATTTTCTTCATCtggg
ttgaaaaagtttcttttgtcTGGATTAAGGTTGCTGTTAATATAATCTCT
TACTTTAGATAAGACTTCTTTACGCAATGCAAGTATGGTTTCCTTTTCCT
CATGCGGCAATTCTAGTGGCAACGGCTCAGATACTATTGTTTTCTCAGAA
AAGAATTTACCAAAATTAAATCTGCAAGGAGTGTTTTTATATTTGCGACA
TGTTTTTGAATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAAT
CAGGATCTTCTTCTTGAGATGGTAAGTTAACTTTGATTATCTTATCAAGA
AACTCTATGTATTCTACCTTTGTTTCTTTAGTTAGTACTGGTGCATTCAA
AATCCAAAGAAATGAATGAATGTGAGGACTACCACGAACTTGGAATTCGA
CACGGATGGCGTAATAAGTGGTTTTACCAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042948-exon-sc0003802-1491911889:6498..7332 | TCONS_00042948-exon-sc0003802-1491911889:6498..7332 | Clytia hemisphaerica | exon |
| TCONS_00042948-exon-sc0003802-1510915933:6498..7332 | TCONS_00042948-exon-sc0003802-1510915933:6498..7332 | Clytia hemisphaerica | exon |
| TCONS_00042948-exon-sc0003802-1575043694:6498..7332 | TCONS_00042948-exon-sc0003802-1575043694:6498..7332 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003802 | supercontig | sc0003802:6498..7332 . |
Blast
The following BLAST results are available for this feature:
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