TCONS_00042928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042928
Unique NameTCONS_00042928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042928 ID=TCONS_00042928|Name=TCONS_00042928|organism=Clytia hemisphaerica|type=transcript|length=632bp
AAAAACTTTTGCttagaataaaataaaagttgttGTTTTCTTACTATGTT
AAAGAttgattttgttaaaaagataGATAACATGATCATAATTTTCTTTC
AGATTGAATTCAATGTAAATATGACTTGTGGTAATTGTGAAAATTCAATT
CGTGACTCCCTTTCAAAATTACAAGGTATAACCTCGGTCACTATCAAcat
tcaacaacaacaagttATCGTCACAACAACCTACCCTTCAGAAGTAGTTC
AAAAAGCTATCGAGTCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGA
CTAGATATTTCTAATCATATGGGTGCTGCTATATCTATTTTGAAACGTAA
TCAAAGGACACTTGGATTAGTACGTTTTACACAGGTAATAATTCCCACCT
CatatttctgaaaaattaatGTTAATAGTCTTCAATCTTTTGGTTGTTtt
acaaaacctttttttaattcaacTTATAAACATCACTTCTCGTTtcatat
acacgctttttggacctgccccggtggaggtcctataaattaacctttgt
ccgttcgttcgttcgtctgttcgtctgttcgttcgttattagctttcctc
atgattggctcgttagttttttctgatttttt
Run BLAST on NCBI

protein sequence of TCONS_00042928-protein

>TCONS_00042928-protein ID=TCONS_00042928-protein|Name=TCONS_00042928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MLKIDFVKKIDNMIIIFFQIEFNVNMTCGNCENSIRDSLSKLQGITSVTI
NIQQQQVIVTTTYPSEVVQKAIESTGMLAIVKGQGLDISNHMGAAISILK
RNQRTLGLVRFTQVIIPTSYF
Run BLAST on NCBI

transcript from alignment at sc0003788:6039..7941+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042928 ID=TCONS_00042928|Name=TCONS_00042928|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at sc0003788:6039..7941+ (Clytia hemisphaerica)
AAAAACTTTTGCttagaataaaataaaagttgttGTTTTCTTACTATGTT
AAAGAttgattttgttaaaaagataGATAACATGATCATAATTTTCTTTC
AGATTGAATTCAATGTAAATATGACTTGTGGTAATTGTGAAAATTCAATT
CGTGACTCCCTTTCAAAATTACAAGGTAAAACCTAGTGTTGAAAAACAAT
GGACTATTTTAGAGACTACCTttagtggataaattttggcgtggatttaa
tttggcgattggccaaaatatgaTTTTTGGTGGGGATTAATTTGGCAata
gatcaatttcgtaaaatttagcGATGATTTAattggcgaattggaaattt
tgtcacactgaaatgggtgaaaattactcaaaaatattctaaaaagttgt
gatttttcacataattcccttttttgttaaatttggcaaaattcaccaaa
ttcgctaaatttaatccccgcgaaaatttgtccacttaaggtagttttct
tttgttttgtgcCTCTTGATGTGTGTAGTGTAGTAATTCTTTATCATCTA
GTGCAGAGTTttacacttttcaaaaaataagttttgacCTCAAAGATGAT
TAGGCAccagggcccggttgttcaaaagttgATTAGATTAAATCCCAATT
ACTGCTAATCGCGATTAGATTTCGATTAGTTAATCCTGACAATTAACGGC
AATTGACTTCCGTTGCTCAAACAACGATTAAGTAATCGTGGACATTTTGC
CTGtgtttcaaaaatcttgacatcttgacatttatTTGCTTGAATTTCTC
ACttcaatgcagcgacttcacTTGTTTTGTAGGAAAAAGCTTCTTAATCC
TTGCTAATCCTGGGTCAGAGCAggattaaaatttggctgatttAATCGGA
ATTTAATCCAGATTAAAgcctattttttttcaaacaaccaattttttttg
ctaattggcgctaatcgagatttaatcaaaaattaagctaatcggccgct
aatccacttttgaacaactgGGCCCAGTGgttcaaatttagaaatggaTA
CCTAAAAATTCTAAGTAAATATATATGTTCttctgaaatattgaaaatcg
aAATACTTCAAGATGTTTGAAGTTTTGGCCCTAAAAATTCTTCCATAGGT
AACCATAGTTTTTCCCTAATTCTAGGTATAACCTCGGTCACTATCAAcat
tcaacaacaacaagttATCGTCACAACAACCTACCCTTCAGAAGTAGTTC
AAAAAGCTATCGAGTCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGA
CTAGGTACAAGAGTAAAATATCGTAAACAATTCTTTTTACAAATACTCAT
GTATCAGTTTTTGGGTGTTATTTAAAAATGTCTTTACCTCCATAGGGCAA
TTAAGTAAGATCCATATATTGAAAAAGTTTTCCAATTTCTCTTTTAAAGT
TGGTCATAAATGTCCTTCTGGCTTAAAAGGATTTcctgaatttgaattat
tttcctaACAGCTTGGGTCAAGAGGCtcctttcaatgaaaaaaaaaataa
attacacatttttttcccATTTCAGATATTTCTAATCATATGGGTGCTGC
TATATCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTTTA
CACAGGTAATAATTCCCACCTCatatttctgaaaaattaatGTTAATAGT
CTTCAATCTTTTGGTTGTTttacaaaacctttttttaattcaacTTATAA
ACATCACTTCTCGTTtcatatacacgctttttggacctgccccggtggag
gtcctataaattaacctttgtccgttcgttcgttcgtctgttcgtctgtt
cgttcgttattagctttcctcatgattggctcgttagttttttctgattt
ttt

Coding sequence (CDS) from alignment at sc0003788:6039..7941+

>TCONS_00042928 ID=TCONS_00042928|Name=TCONS_00042928|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0003788:6039..7941+ (Clytia hemisphaerica)
ATGTTAAAGAttgattttgttaaaaagataGATAACATGATCATAATTTT
CTTTCAGATTGAATTCAATGTAAATATGACTTGTGGTAATTGTGAAAATT
CAATTCGTGACTCCCTTTCAAAATTACAAGGTATAACCTCGGTCACTATC
AAcattcaacaacaacaagttATCGTCACAACAACCTACCCTTCAGAAGT
AGTTCAAAAAGCTATCGAGTCCACTGGAATGCTTGCTATTGTCAAAGGAC
AAGGACTAGATATTTCTAATCATATGGGTGCTGCTATATCTATTTTGAAA
CGTAATCAAAGGACACTTGGATTAGTACGTTTTACACAGGTAATAATTCC
CACCTCatatttctgaATGTTAAAGAttgattttgttaaaaagataGATA
ACATGATCATAATTTTCTTTCAGATTGAATTCAATGTAAATATGACTTGT
GGTAATTGTGAAAATTCAATTCGTGACTCCCTTTCAAAATTACAAGGTAT
AACCTCGGTCACTATCAAcattcaacaacaacaagttATCGTCACAACAA
CCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAGTCCACTGGAATGCTT
GCTATTGTCAAAGGACAAGGACTAGATATTTCTAATCATATGGGTGCTGC
TATATCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTTTA
CACAGGTAATAATTCCCACCTCatatttctgaATGTTAAAGAttgatttt
gttaaaaagataGATAACATGATCATAATTTTCTTTCAGATTGAATTCAA
TGTAAATATGACTTGTGGTAATTGTGAAAATTCAATTCGTGACTCCCTTT
CAAAATTACAAGGTATAACCTCGGTCACTATCAAcattcaacaacaacaa
gttATCGTCACAACAACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGA
GTCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGACTAGATATTTCTA
ATCATATGGGTGCTGCTATATCTATTTTGAAACGTAATCAAAGGACACTT
GGATTAGTACGTTTTACACAGGTAATAATTCCCACCTCatatttctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026695XLOC_026695Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042928-proteinTCONS_00042928-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042928-exon-sc0003788-1491911889:6039..6213TCONS_00042928-exon-sc0003788-1491911889:6039..6213Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1510915933:6039..6213TCONS_00042928-exon-sc0003788-1510915933:6039..6213Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1575043694:6039..6213TCONS_00042928-exon-sc0003788-1575043694:6039..6213Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1491911889:7214..7342TCONS_00042928-exon-sc0003788-1491911889:7214..7342Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1510915933:7214..7342TCONS_00042928-exon-sc0003788-1510915933:7214..7342Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1575043694:7214..7342TCONS_00042928-exon-sc0003788-1575043694:7214..7342Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1491911889:7614..7941TCONS_00042928-exon-sc0003788-1491911889:7614..7941Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1510915933:7614..7941TCONS_00042928-exon-sc0003788-1510915933:7614..7941Clytia hemisphaericaexon
TCONS_00042928-exon-sc0003788-1575043694:7614..7941TCONS_00042928-exon-sc0003788-1575043694:7614..7941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003788supercontigsc0003788:6039..7941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3189	13.6725	6.59336	4.98204	3.19318	1.28544	1.23742	1.97575	2.37267	2.01721	1.21467	1.28558	1.21484	0.953995	1.17587	1.69741	1.91578	2.92644	1.59003	1.04626	2.85033	2.868	7.54039	7.33792	1.27939	1.52377	2.14265	1.50221	4.63455	5.22849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006121HMA_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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