TCONS_00042911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042911
Unique NameTCONS_00042911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042911 ID=TCONS_00042911|Name=TCONS_00042911|organism=Clytia hemisphaerica|type=transcript|length=1290bp
TTTCGGGAAAAGTTGTTCGCTTTTCATGACCCAGAACATAATGTAATCAT
TAGGTCAATAACAACCTCGTTTCCAAAATAAAATCCCgggcaattttttt
tcgtgTCCCAGTCTGCCGGACTGCCGGACAGTCAACAGTCACGAGGGTCA
AAAGTGAAgggttaaaggaagaaattttcaagaaaatttaaacTCTGATG
TCCATTTTTGCTGGACTAGACGACAGTAGTGGTTCGAATATTGACTTTTC
TTTATCATTATCTTATCAAGGATTGAATGAAATACCCGAAGATGTGATCA
AGAAACATTCAAAGCAAACAACGTCACTTGATCTTAGTTACAACATTTTC
AAGTGCTTGATATCGTTACGACAATTTGACCAGTTGCATACTGTTATTTT
GGATCATAATGCCTTGGATGAACATTTTTGCTTCCCTGGAAAATTCCCTG
CCATCAAACTCCTCTCAGTAAATGGAAACAAGATCGCGAATTTGAGTGTC
TTTGTAAACAGAATGTCGCAAGATTTACCTAATCTGACATTTCTAAGTAT
GATGAAAAATGACGCAGCTCCAAGCTACTTTAATGGAGGTACAAAATCAC
AAAATGAAGATTACAGGTCCTATGTCATCAGCCATTTCCCAAAACTAAGG
AACTTAGATGGATGGCCCATCCTTGATGGAGAACGTGAACAAGCATATAG
ACTATATGGAAAGAGATGGAAGATTAAAAAGAGAACTGCAAGCAGTTACA
CATGAACTTATCCAATGTTCTTATTTAGCAGGCCCAATAGTTACATCATT
TATTAAAAGCCTTTCTAAAGGCATACAATTCAACAACATGAAACTACATG
GAAAGTGTTGTTTTATTCAATGATAATAACTTGCAACTTTTAAAGCTCAA
ATATAGATCTATTTGACCAAATTTAGAAAGCAATGCTTAAAATTTTAATT
TTTGATAGCTAGTTTCTAAATATAAGAATTCTAAGGAATTCTAAGGAATT
GGGTTCAAAAAGTTGCCCAAATTTCTTTAGGCAACTTTAAATTGTGTTAG
AAATGAACAAAACATTTGAAGCTTTATAGAAAATGAATGACTGGTAATTC
ACCTGCCAAAGTTTTTcagtttaattttttaaaattaaaatataattttg
tacattttgatatgcattatttttaatatttttatttttgatatttttat
ttgaaatttgtaaTTTATAGTATTCCCAAAATAAATGTTGACCTTTTGAT
AACAACTTCAAGAATGATGCCATGTAGGGCTTGATTAACC
Run BLAST on NCBI

protein sequence of TCONS_00042911-protein

>TCONS_00042911-protein ID=TCONS_00042911-protein|Name=TCONS_00042911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MSIFAGLDDSSGSNIDFSLSLSYQGLNEIPEDVIKKHSKQTTSLDLSYNI
FKCLISLRQFDQLHTVILDHNALDEHFCFPGKFPAIKLLSVNGNKIANLS
VFVNRMSQDLPNLTFLSMMKNDAAPSYFNGGTKSQNEDYRSYVISHFPKL
RNLDGWPILDGEREQAYRLYGKRWKIKKRTASSYT
Run BLAST on NCBI

transcript from alignment at sc0003770:1466..5874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042911 ID=TCONS_00042911|Name=TCONS_00042911|organism=Clytia hemisphaerica|type=transcript|length=4409bp|location=Sequence derived from alignment at sc0003770:1466..5874- (Clytia hemisphaerica)
TTTCGGGAAAAGTTGTTCGCTTTTCATGACCCAGAACATAATGTAATCAT
TAGGTCAATAACAACCTCGTTTCCAAAATAAAATCCCGGGCAATTTTTTT
TCGTGTCCCAGTCTGCCGGACTGCCGGACAGTCAACAGTCACGAGGGTCA
AAAGTGAAGGGTTAAAGGAAGAAATTTTCAAGAAAATTTAAACTCTGATG
TCCATTTTTGCTGGACTAGACGACAGTAGTGGTTCGAATATTGACTTTTC
TTTATCATTATCTTATCAAGGATTGAATGAAATACCCGAAGATGTGATCA
AGAAACATTCAAAGCAAACAACGTCACTTGATCTTAGTTACAACATTTTC
AAGTATAGTTATATATTTTTATTAAATACACCTATCCCGTATTTGTAAAA
CTAATGCGCGCGCATTATTTTGATGCTCTCCACCGTTTGGTCTCTGGAGG
TAAATAAACCCGTTTTTGCCTGCGTTCCCTTAGGGAAAGTTGGTTTTTTG
AGCTTTTCTTATAAGTTCTGCCAGTCAGGATTAACCGCCTAAATAGGAAC
AAATTTTTCGATTTCACAAATATTCTTATCTAGGATATAGGTACTTATCT
AGGAATAATTTTTATTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAACGCATGCAAACTTCCTCGTAACTT
TCTCGTGTCCATCATTAAAATTTTACAACTTTATTACGCTTCAAGTCACG
TGATAAAAATAATTCGGGCGCTTAGTCAACCTGGTTTCCCCGTCCTTATT
GTTTATTACAAGCACACGCTTGACCGCTTGACACACTCTAGGCGCGTTTC
TCATATTATATTAACAATCTGTGACGTGATAGGGAGAGTACAATTTAGTG
ATTGATTGATAACTTGGGTATGTATTTGTTTATGTTTGATTTTTTATTTC
GAAGACCAGCCTACAGCTATGTCGAAATTAGAAGACGTATGTCGATATTA
GACGATCCTACGGTAGTAATTTAGGAGAACCACCCGATGGTCTATTGAAT
GACAAATTACTCATATAAATACTTATTGTATTTGTTTTAGTCTGGAAAAT
AAATATTGACATTTTTGTGAAAACTTGCAATTTTGAGTCATTTAGTGATA
ACGGTATGAAATTTAAAAAAAAAAAGTAGAGAATGGTCTTTTTGATTGTG
TGAGTGTAAGGAAGAAACTAAAAAGCATTCAGTCCATGTCTCGTGCCTGA
TTCATACAGGTATTATTACAAAGTTTAATTTTTTCAAGGTGCTTGATATC
GTTACGACAATTTGACCAGTTGCATACTGTTATTTTGGATCATAATGCCT
TGGATGAACATTTTTGCTTCCCTGGAAAATTCCCTGCCATCAAACTCCTC
TCAGTAAATGGAAACAAGATCGCGAATTTGAGTGTCTTTGTAAACAGAAT
GTCGCAAGATTTACCTAATCTGACATTTCTAAGTATGATGAAAAATGACG
CAGCTCCAAGCTACTTTAATGGAGGTACAAAATCACAAAATGAAGATTAC
AGGTTAGATTTCATCATTCTTTGTTTACATAGTCTTGTCCAAAACATTTA
CCCAATGGTTTACTGAAGTTCTCTCCATAAATTTTGTCCAATTATTTACT
TACCCCCTATCTTTATTTGACCTCACCCCTAGAAGCTGAAACCCCCCATT
TTGATTATAAATTAAGGAAGGGAGTCAAAGGTTCACACTGTAGCATTTTC
TGAAATCTTTTCCTCAAGAGTCAACCCAAAAAAACTTGTTAAAATAAAGT
GTTAAATAATAAGCTTAGAATTGCTTATCGTCTCAAAAAAGTATAAAATA
GTTATTCAAAGTTTTTTTTAAAAATATTTTGTTAGGTCCTATGTCATCAG
CCATTTCCCAAAACTAAGGAACTTAGATGGATGGCCCATCCTTGATGGAG
AACGTGAACAAGCATATAGACTATATGGAAAGAGATGGAAGATTAAAAAG
AGAACTGCAAGCAGTTACACATGAACTTATCCAATGTTCTTATTTAGCAG
GCCCAATAGTTACATCATTTATTAAAAGCCTTTCTAAAGGCATACAATTC
AACAACATGAAACTACATGGAAAGTGTTGTTTTATTCAATGATAATAACT
TGCAACTTTTAAAGCTCAAATATAGATCTATTTGACCAAATTTAGAAAGC
AATGCTTAAAATTTTAATTTTTGATAGCTAGTTTCTAAATATAAGAATTC
TAAGGAATTCTAAGGAATTGGGTTCAAAAAGTTGCCCAAATTTCTTTAGG
CAACTTTAAATTGTGTTAGAAATGAACAAAACATTTGAAGCTTTATAGAA
AATGAATGACTGGTAATTCACCTGCCAAAGTTTTTCAGTTTAATTTTTTA
AAATTAAAATATAATTTTGTACATTTTGATATGCATTATTTTTAATATTT
TTATTTTTGATATTTTTATTTGAAATTTGTAATTTATAGTATTCCCAAAA
TAAATGTTGACCTTTTGATAACAACTTCAAGAATGATGCCATGTAGGGCT
TGATTAACC

Coding sequence (CDS) from alignment at sc0003770:1466..5874-

>TCONS_00042911 ID=TCONS_00042911|Name=TCONS_00042911|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0003770:1466..5874- (Clytia hemisphaerica)
GTCCTATGTCATCAGCCATTTCCCAAAACTAAGGAACTTAGATGGATGGC
CCATCCTTGATGGAGAACGTGAACAAGCATATAGACTATATGGAAAGAGA
TGGAAGATTAAAAAGAGAACTGCAAGCAGTTACACATGAGTGCTTGATAT
CGTTACGACAATTTGACCAGTTGCATACTGTTATTTTGGATCATAATGCC
TTGGATGAACATTTTTGCTTCCCTGGAAAATTCCCTGCCATCAAACTCCT
CTCAGTAAATGGAAACAAGATCGCGAATTTGAGTGTCTTTGTAAACAGAA
TGTCGCAAGATTTACCTAATCTGACATTTCTAAGTATGATGAAAAATGAC
GCAGCTCCAAGCTACTTTAATGGAGGTACAAAATCACAAAATGAAGATTA
CAGATGTCCATTTTTGCTGGACTAGACGACAGTAGTGGTTCGAATATTGA
CTTTTCTTTATCATTATCTTATCAAGGATTGAATGAAATACCCGAAGATG
TGATCAAGAAACATTCAAAGCAAACAACGTCACTTGATCTTAGTTACAAC
ATTTTCAAGTCCTATGTCATCAGCCATTTCCCAAAACTAAGGAACTTAGA
TGGATGGCCCATCCTTGATGGAGAACGTGAACAAGCATATAGACTATATG
GAAAGAGATGGAAGATTAAAAAGAGAACTGCAAGCAGTTACACATGAGTG
CTTGATATCGTTACGACAATTTGACCAGTTGCATACTGTTATTTTGGATC
ATAATGCCTTGGATGAACATTTTTGCTTCCCTGGAAAATTCCCTGCCATC
AAACTCCTCTCAGTAAATGGAAACAAGATCGCGAATTTGAGTGTCTTTGT
AAACAGAATGTCGCAAGATTTACCTAATCTGACATTTCTAAGTATGATGA
AAAATGACGCAGCTCCAAGCTACTTTAATGGAGGTACAAAATCACAAAAT
GAAGATTACAGATGTCCATTTTTGCTGGACTAGACGACAGTAGTGGTTCG
AATATTGACTTTTCTTTATCATTATCTTATCAAGGATTGAATGAAATACC
CGAAGATGTGATCAAGAAACATTCAAAGCAAACAACGTCACTTGATCTTA
GTTACAACATTTTCAAGTCCTATGTCATCAGCCATTTCCCAAAACTAAGG
AACTTAGATGGATGGCCCATCCTTGATGGAGAACGTGAACAAGCATATAG
ACTATATGGAAAGAGATGGAAGATTAAAAAGAGAACTGCAAGCAGTTACA
CATGAGTGCTTGATATCGTTACGACAATTTGACCAGTTGCATACTGTTAT
TTTGGATCATAATGCCTTGGATGAACATTTTTGCTTCCCTGGAAAATTCC
CTGCCATCAAACTCCTCTCAGTAAATGGAAACAAGATCGCGAATTTGAGT
GTCTTTGTAAACAGAATGTCGCAAGATTTACCTAATCTGACATTTCTAAG
TATGATGAAAAATGACGCAGCTCCAAGCTACTTTAATGGAGGTACAAAAT
CACAAAATGAAGATTACAGATGTCCATTTTTGCTGGACTAGACGACAGTA
GTGGTTCGAATATTGACTTTTCTTTATCATTATCTTATCAAGGATTGAAT
GAAATACCCGAAGATGTGATCAAGAAACATTCAAAGCAAACAACGTCACT
TGATCTTAGTTACAACATTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026678XLOC_026678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042911-proteinTCONS_00042911-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042911-exon-sc0003770-1575043694:5523..5874TCONS_00042911-exon-sc0003770-1575043694:5523..5874Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1575043694:2473..2736TCONS_00042911-exon-sc0003770-1575043694:2473..2736Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1575043694:1466..2139TCONS_00042911-exon-sc0003770-1575043694:1466..2139Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1510915933:5523..5874TCONS_00042911-exon-sc0003770-1510915933:5523..5874Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1510915933:2473..2736TCONS_00042911-exon-sc0003770-1510915933:2473..2736Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1510915933:1466..2139TCONS_00042911-exon-sc0003770-1510915933:1466..2139Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1491911889:5523..5874TCONS_00042911-exon-sc0003770-1491911889:5523..5874Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1491911889:2473..2736TCONS_00042911-exon-sc0003770-1491911889:2473..2736Clytia hemisphaericaexon
TCONS_00042911-exon-sc0003770-1491911889:1466..2139TCONS_00042911-exon-sc0003770-1491911889:1466..2139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003770supercontigsc0003770:1466..5874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.1824	34.4684	14.9754	10.9065	31.645	23.3625	25.4011	25.8343	22.9547	18.0533	19.0192	15.2784	12.9435	15.6407	13.1942	12.5195	17.4925	17.2222	11.0594	13.5078	14.4062	13.094	43.5756	43.6535	9.44344	14.2459	13.4106	13.7358	29.7972	30.9896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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