TCONS_00042815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042815
Unique NameTCONS_00042815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042815 ID=TCONS_00042815|Name=TCONS_00042815|organism=Clytia hemisphaerica|type=transcript|length=230bp
TTCAGATTTTCACCGGACGGGCGACTGATTGTGTCTGCCAGTGACGATAA
ATCTATCAAACTATGGGACCGAACATCCAAAGAATGCACTCACACTTTCT
ACGAATATGGAGGGTTTGTGAATCACGTGGAATTTCATCCCAATGGAACA
TGTATTGCAGCAGGTGGCTCGGATAATACTGTCAAAGTTTGGGATATACG
CATGAACAAGCTACTACAACACTATCAAGG
Run BLAST on NCBI

transcript from alignment at sc0003703:580..2475+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042815 ID=TCONS_00042815|Name=TCONS_00042815|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at sc0003703:580..2475+ (Clytia hemisphaerica)
TTCAGATTTTCACCGGACGGGCGACTGATTGTGTCTGCCAGTGACGATAA
ATCTATCAAACTATGGGACCGAACATCCAAAGAATGCACTCACACTTTCT
ACGAATATGGAGGGTACGTCAGCTAGTCTAGCAGGAAATGAGAATTTGAA
CAATCTTCGTTTTAGAAATAAAACCCAAAAATTTGGATTCTTCCTACCAG
AAAGTCTTCCGTTATCAGAAGGGTGAAGGGTggcgaaagaaaatttttca
ccttCTAAATACCATAAACCACTATATAATTGGATAAAACAGCAGTTTTT
AAGGTTTGCTCTGTTTAAAGTAATGGTTTCAAACTATCAAGctcaaatct
tttaaaagtaagGGGGCTTGTCATAACGGGGGCCCTATGACCTTGTACAA
AACGTAATTGAAATTTCGTGAATTTTTCCAGGTTTGTGAATCACGTGGAA
TTTCATCCCAATGGAACATGTATTGCAGCAGGTGGCTCGGATAATACTGT
CAAAGTAAGTTTGAAGTTCCGTTCACACAAGGAACTAGCCTGGTTAACAA
CAAGGAACTTGGTTCACAGTAATACACCCCTGGGTCAGTGGCCCGGTCAG
ATCCTCAACGGTGAGTAGCCCTGTgaaaaaaatgcctaaaaacagGCCAA
ATTTtttccccggtggaaaattggtAACCTCggtcaaaaaataatcaaaa
atttgaacccagtcaaattttagaattttatagatcaaaatttgaaccca
gtgaaattttagaaatttatagTTGAGGCCCGGTCAAATATCATCCTTTT
TAGGTCACCCTGGTCAAAAAAGGGAAATGCTTATCGCCCTGtaccgaaaa
attgaaaaattgaaaaattgagccCGGATGTTTATTGGAGTTATTTTCTT
AGCCACCGCGGTGAGCTTTTAAACTCTACcgggttactgagacaggggtg
tagtaattttatataaaacactaggtAGAAGTACTTCTTTCCTACAATGC
CGGTAAAAATATaatgagaattttggttaattcctcctttttagcaattt
aaagttcgggcgagaaagtcgattttggaggggtttgTAGACTTCAAGGC
TATATTCTTACCCTATTGGACCGTtcttaaacttttggatcctcagattc
taagtcTTAAGAAGCCTCATGTATATAAACTCTACTCTTCCAACCaaagt
tagagcgcttccaaatcgtttgtggttataagaNACTCTACTCTTCCAAC
CAAAggtagagcgcttccaaatcgtttgtggttataagatttcgtgggaa
ttccccttttttctcaaatattatgaccggGATTGTACCTGTAACAAAAT
AATTCGCCATTTTTAATAAGCCGACCATAGTCTTGTGCCAGCAATTTGAT
AGATCATTTAACTCAATTCTTCGTGCCATTCAGGTTTTTTGGTTAGGTTA
CAAATCACCGGTACTAAACTATGGTCCACTATGGTCTACATTCATCAAAG
ATGGCGAATTGTTTTGCTTCAACTTCTAAAAAGTTCTAACGAACATGCTG
CGAATGTGATGATCTGACAAGATCGTTCGAGTAAAACATTCAGCATCGCG
ATGTCTTTTTTGCTCGAAAGCTAAAGTGACTGGCTTccaataatgttttt
tttttattggcagCGTATATTGTTATACACGTCGTACTCGATTGTTTCAC
CGCACTGGAAGACCATTAATGTGCATCTGAAATCTGCATGAGATAACTTC
ATAATCAGGATCTGCTCGGAAATTAGCATAAAAtgtataaaataagaaaa
atggaTGAATGctaaactttattttgaagatatcTTTAATCTTTCGTTTT
AGGTTTGGGATATACGCATGAACAAGCTACTACAACACTATCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026609XLOC_026609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042815-exon-sc0003703-1491911889:580..692TCONS_00042815-exon-sc0003703-1491911889:580..692Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1510915933:580..692TCONS_00042815-exon-sc0003703-1510915933:580..692Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1575043694:580..692TCONS_00042815-exon-sc0003703-1575043694:580..692Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1491911889:1011..1083TCONS_00042815-exon-sc0003703-1491911889:1011..1083Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1510915933:1011..1083TCONS_00042815-exon-sc0003703-1510915933:1011..1083Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1575043694:1011..1083TCONS_00042815-exon-sc0003703-1575043694:1011..1083Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1491911889:2432..2475TCONS_00042815-exon-sc0003703-1491911889:2432..2475Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1510915933:2432..2475TCONS_00042815-exon-sc0003703-1510915933:2432..2475Clytia hemisphaericaexon
TCONS_00042815-exon-sc0003703-1575043694:2432..2475TCONS_00042815-exon-sc0003703-1575043694:2432..2475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003703supercontigsc0003703:580..2475 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9002	9.27018	104.048	146.256	56.977	51.7776	28.5178	16.5273	19.582	17.6403	12.8416	7.73809	9.83479	10.2135	8.99669	9.65482	15.0657	13.8164	4.49131	3.52487	12.255	5.97757	24.2217	19.819	35.1558	38.4606	7.24171	7.72855	19.9302	15.5279
Blast
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BLAST of TCONS_00042815 vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.131e-37
Identity = 54/75 (72.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    4 RFSPDGRLIVSASDDKSIKLWDRTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQHYQ 228
            +FSPDGRLIVSASDDK++KLWD++S+EC H++ E+GGFV +V+FHP+GTCIAA G DNTVKVWD+R ++LLQHYQ
Sbjct:  152 KFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQ 226
The following BLAST results are available for this feature:
BLAST of TCONS_00042815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1A2.131e-3772.00POC1 centriolar protein homolog A OS=Homo sapiens ... [more]
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