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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042811 ID=TCONS_00042811|Name=TCONS_00042811|organism=Clytia hemisphaerica|type=transcript|length=1846bp
AAGGTATTAAGAGGAAAGAGAAAAGAGAGAGGTGATACCTTATCAATGAG
AAAACAGTAAACTATGTACCTAATGGGGGTCTAGCCAAAAATAAAACATG
AGCTCGTGCAGAATTGTGTATCAGGACATGGCACAAATTCCCGCACAAAT
TATTAAGTTATAGGGGGCATAGCGCAAGGTCAAAAATTGGGACAGGCAGG
GCAGGTAATCACTGACATATCAGACCAGAACTTAATCGTCtaggcaaaaa
aacaaaaaaaacaggaCTAAATAAATGATAATAGATAATAGATCGATCGA
GCTCATTGTTCAGTTATCAACAAGTGTAGTTAAAACTCTTGAAAGGGTAG
ATACTTCTTAGCTTGTGTGTCATATTTCATTAATATTGCTGGATATTTCC
CATACATTTTAGCATTGTCACCACGTTCTTGAATTTCCTTCCTCAGATTT
GAAGCAATCTTACGTCTTGCTNATACATTTTAGCATTGTCACCACGTTCT
TGAATTTCCTTCCTCAGATTTGAAGCAATCTTACGTCTTGCCGTGACTTT
TGGGGAGTACATGTGATCAACATAAACCTCGGTGCTGGTATTGTTTCTTT
TAAGTGAGCGATTATGTTGGACAAGAGAATCAAAGTAATATTCAGCACTT
TTCCAAGAAGTAAACTGGACGAAAATGGGTCggtctttgttgttgttgtt
atttctGTCATTACGATTACCAGCTGGTCGGTGGGCCCTGTCAATGTCAG
TCATAACATCATCATAATTTACCTTGTTGTCAATATTGCTCAAGAAGGTT
GCAAGTTTGCTAGCAGTCTTTGACCATTTTTCATTCTCTTATTCCTTGAT
TCCACGAAAGATGAGTGTTTTTCTAAGGTTGCGCTTTATTTGGTCATCTA
GTGTTTGTTCTAATTTGTCTTTCTNTCTAAGGTTGCGATTTATTTGGTCA
TCTAGTGTTTGTTCTAATCTGTCTTTCTCTGTAGAAAGACTTGAAAGTTT
CTTTGAAAGGTTAAGAATGTCTGCCTTGAGATGATCCGTAGTGGTTTCAA
GAATAGTGATTTTGTTCTcattatcatttgtttttgtcTTTAGTTTCGAG
ATTTCGTTACCTGTCTGAACTCTGAGATATTAGTGTCAATGAGTTCACAT
TTCCTTGTCAGTTCTGCATGATTCGAGTCCATTCTGTTTAGAATATCACT
CTTGAAGTCTTGAAGGATAGTTTTGAAATCGTTTGCGATGTTAGTTACTA
GTTTTTAAACAATGATTGATAAGATTGTAgaagattaaaaataattttat
tgagTTTGGTGCCTGTGTCTCTGATATACGTCCGCACTACTCGGCTACCA
TCCTGCGAAAAAAAGATCATCAACATGAAGAGCTCCtttcaaagtttctt
tcaaaTCATCCTCACAATGGGTTTCGATGTGTTTTTGAAGTGTCGCTTGC
AATAAAAAGGGCGAGGAATTCAAACCAAAAATAACACGTGTAAATCGTAA
TTCAATAAGTTCATTGTTCTCAAAGTTTTCGAAGTCAAAATTTTCGGTGT
CTTTGAACCAAAGAAATCTCACAAAGTTTTTATCTTCTTCAAACAATGCG
ATTTGCCAAAATGCTTTTTCAAGATCACCGGAAATAACGAAATTATGTGC
TCTCAATTTAATCAAAACGTCCAACAGAGGAGCGGTTATTGTTGGACCAG
TATACAAAACATCATTTAAAGAGGGTCCGCCCACTCGACTTTTGCAACTA
GCGTCGAAAACAATACGAAGGGGTGTTGTTTGTTTATCAGTTCTTATAAC
CCCACGATGACTTAAATAATGGGAGGTGCCAATAGAATATTTCTCA Run BLAST on NCBI protein sequence of TCONS_00042811-protein >TCONS_00042811-protein ID=TCONS_00042811-protein|Name=TCONS_00042811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
EKYSIGTSHYLSHRGVIRTDKQTTPLRIVFDASCKSRVGGPSLNDVLYTG
PTITAPLLDVLIKLRAHNFVISGDLEKAFWQIALFEEDKNFVRFLWFKDT
ENFDFENFENNELIELRFTRVIFGLNSSPFLLQATLQKHIETHCEDDLKE
TLKGALHVDDLFFAGW Run BLAST on NCBI transcript from alignment at sc0003697:8344..10189 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042811 ID=TCONS_00042811|Name=TCONS_00042811|organism=Clytia hemisphaerica|type=transcript|length=1846bp|location=Sequence derived from alignment at sc0003697:8344..10189 (Clytia hemisphaerica)
TGAGAAATATTCTATTGGCACCTCCCATTATTTAAGTCATCGTGGGGTTA
TAAGAACTGATAAACAAACAACACCCCTTCGTATTGTTTTCGACGCTAGT
TGCAAAAGTCGAGTGGGCGGACCCTCTTTAAATGATGTTTTGTATACTGG
TCCAACAATAACCGCTCCTCTGTTGGACGTTTTGATTAAATTGAGAGCAC
ATAATTTCGTTATTTCCGGTGATCTTGAAAAAGCATTTTGGCAAATCGCA
TTGTTTGAAGAAGATAAAAACTTTGTGAGATTTCTTTGGTTCAAAGACAC
CGAAAATTTTGACTTCGAAAACTTTGAGAACAATGAACTTATTGAATTAC
GATTTACACGTGTTATTTTTGGTTTGAATTCCTCGCCCTTTTTATTGCAA
GCGACACTTCAAAAACACATCGAAACCCATTGTGAGGATGAtttgaaaga
aactttgaaaGGAGCTCTTCATGTTGATGATCTTTTTTTCGCAGGATGGT
AGCCGAGTAGTGCGGACGTATATCAGAGACACAGGCACCAAActcaataa
aattatttttaatcttcTACAATCTTATCAATCATTGTTTAAAAACTAGT
AACTAACATCGCAAACGATTTCAAAACTATCCTTCAAGACTTCAAGAGTG
ATATTCTAAACAGAATGGACTCGAATCATGCAGAACTGACAAGGAAATGT
GAACTCATTGACACTAATATCTCAGAGTTCAGACAGGTAACGAAATCTCG
AAACTAAAgacaaaaacaaatgataatgAGAACAAAATCACTATTCTTGA
AACCACTACGGATCATCTCAAGGCAGACATTCTTAACCTTTCAAAGAAAC
TTTCAAGTCTTTCTACAGAGAAAGACAGATTAGAACAAACACTAGATGAC
CAAATAAATCGCAACCTTAGANAGAAAGACAAATTAGAACAAACACTAGA
TGACCAAATAAAGCGCAACCTTAGAAAAACACTCATCTTTCGTGGAATCA
AGGAATAAGAGAATGAAAAATGGTCAAAGACTGCTAGCAAACTTGCAACC
TTCTTGAGCAATATTGACAACAAGGTAAATTATGATGATGTTATGACTGA
CATTGACAGGGCCCACCGACCAGCTGGTAATCGTAATGACagaaataaca
acaacaacaaagaccGACCCATTTTCGTCCAGTTTACTTCTTGGAAAAGT
GCTGAATATTACTTTGATTCTCTTGTCCAACATAATCGCTCACTTAAAAG
AAACAATACCAGCACCGAGGTTTATGTTGATCACATGTACTCCCCAAAAG
TCACGGCAAGACGTAAGATTGCTTCAAATCTGAGGAAGGAAATTCAAGAA
CGTGGTGACAATGCTAAAATGTATNAGCAAGACGTAAGATTGCTTCAAAT
CTGAGGAAGGAAATTCAAGAACGTGGTGACAATGCTAAAATGTATGGGAA
ATATCCAGCAATATTAATGAAATATGACACACAAGCTAAGAAGTATCTAC
CCTTTCAAGAGTTTTAACTACACTTGTTGATAACTGAACAATGAGCTCGA
TCGATCTATTATCTATTATCATTTATTTAGtcctgttttttttgtttttt
tgcctaGACGATTAAGTTCTGGTCTGATATGTCAGTGATTACCTGCCCTG
CCTGTCCCAATTTTTGACCTTGCGCTATGCCCCCTATAACTTAATAATTT
GTGCGGGAATTTGTGCCATGTCCTGATACACAATTCTGCACGAGCTCATG
TTTTATTTTTGGCTAGACCCCCATTAGGTACATAGTTTACTGTTTTCTCA
TTGATAAGGTATCACCTCTCTCTTTTCTCTTTCCTCTTAATACCTT Coding sequence (CDS) from alignment at sc0003697:8344..10189 >TCONS_00042811 ID=TCONS_00042811|Name=TCONS_00042811|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0003697:8344..10189 (Clytia hemisphaerica)
GAGAAATATTCTATTGGCACCTCCCATTATTTAAGTCATCGTGGGGTTAT
AAGAACTGATAAACAAACAACACCCCTTCGTATTGTTTTCGACGCTAGTT
GCAAAAGTCGAGTGGGCGGACCCTCTTTAAATGATGTTTTGTATACTGGT
CCAACAATAACCGCTCCTCTGTTGGACGTTTTGATTAAATTGAGAGCACA
TAATTTCGTTATTTCCGGTGATCTTGAAAAAGCATTTTGGCAAATCGCAT
TGTTTGAAGAAGATAAAAACTTTGTGAGATTTCTTTGGTTCAAAGACACC
GAAAATTTTGACTTCGAAAACTTTGAGAACAATGAACTTATTGAATTACG
ATTTACACGTGTTATTTTTGGTTTGAATTCCTCGCCCTTTTTATTGCAAG
CGACACTTCAAAAACACATCGAAACCCATTGTGAGGATGAtttgaaagaa
actttgaaaGGAGCTCTTCATGTTGATGATCTTTTTTTCGCAGGATGGTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042811-exon-sc0003697-1491911889:8344..10189 | TCONS_00042811-exon-sc0003697-1491911889:8344..10189 | Clytia hemisphaerica | exon |
| TCONS_00042811-exon-sc0003697-1510915933:8344..10189 | TCONS_00042811-exon-sc0003697-1510915933:8344..10189 | Clytia hemisphaerica | exon |
| TCONS_00042811-exon-sc0003697-1575043694:8344..10189 | TCONS_00042811-exon-sc0003697-1575043694:8344..10189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003697 | supercontig | sc0003697:8344..10189 . |
Blast
The following BLAST results are available for this feature:
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