TCONS_00042796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042796
Unique NameTCONS_00042796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042796 ID=TCONS_00042796|Name=TCONS_00042796|organism=Clytia hemisphaerica|type=transcript|length=1302bp
ACCAGGTGCTAACAtcttaatatctttttaaacaATCAAAGATAATACGC
AACTAATCCCACAGTACTTCCCGGTCGTTTAATACgattatttcatctat
gaataatcgaacaatatgcgaaattttcgactctggGTCGTCTTGTTTGT
TGTTAATTCTATACAACCTCAAGTCGAAGATAGAGAAGACCTTTCGTCAT
TATTAAGTTCTTTTAAGTTAATCAGTTTGTCAATGAAAATTAAGGCTTCG
TGTGGTGTGATTTCCTCCGGGTCAATTTCTTGAACCTCATCTTCACTTTC
CAGGCGGGAAAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGAC
CCTGACTTATACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCC
TGACGTTTTTGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAG
CTGCCAAAGACATGTGGACACAACTCGTTGAATTACAACCGCAAACAGGT
GGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGATTGCTGC
AGACATCCAAGAGAAGTTACCAACACTTTATGACGTGAATGGTTTCAGAA
agaaattaggattagagatatcaCCAACGACTGTGGTCTTATTACAAGAG
TTAGATGTGTTGATCAGGAAAATGGGCACCACCCTGATGAACCTACAAAG
GcggaCGTAGACTTGATTTAGCGGCCGTAGACCTGAATTAACGaccgaag
acctgaattaaacGGTCGAAGACCTGGATCAACGACTTTAGATAGGCATG
AATACCATTTACTTTATTATCTTTATAATTGTAATGTTTGATCTAAAATA
TAAGAAGCAAATATAGTACATCCAATACCAggggcggtgcgacacccctg
caaaacatgcactcgcagggtatgctccggagtcatttttgtcgcagctt
gtttttagcCTACCCGGAGTTGTTTTTCCGGATCATTCGTTAGtgtcatt
agatttattttactgacttaaagtccgcggtaaatataagaaaactgttT
ATCAAGTCGCGCTACAGGAAGCGTGAATTCCAGTCttcattttagatttt
gtgCACAAAACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaag
acctggatgaggtcaaaatgcagggtttgcccgggatttgatggctgtta
gtgacaaaacgttaaaagtcaagactcgtcaaatggctttagatgcttgg
agaagaaaaaacagaatagacagtcctggttttatctattttgtcgcaaa
tt
Run BLAST on NCBI

transcript from alignment at sc0003684:8608..11700+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042796 ID=TCONS_00042796|Name=TCONS_00042796|organism=Clytia hemisphaerica|type=transcript|length=3093bp|location=Sequence derived from alignment at sc0003684:8608..11700+ (Clytia hemisphaerica)
ACCAGGTGCTAACAtcttaatatctttttaaacaATCAAAGATAATACGC
AACTAATCCCACAGTACTTCCCGGTCGTTTAATACgattatttcatctat
gaataatcgaacaatatgcgaaattttcgactctggGTCGTCTTGTTTGT
TGTTAATTCTATACAACCTCAAGTCGAAGATAGAGAAGACCTTTCGTCAT
TATTAAGTTCTTTTAAGTTAATCAGTTTGTCAATGAAAATTAAGGCTTCG
TGTGGTGTGATTTCCTCCGGGTCAATTTCTTGAACCTCATCTTCACTTTC
CAGGTCAGATTTTGGGTTTTCTTCATTTCCAGATTCTTTATTCAAATACT
CGCTAACACATTTACTCGCGGAGCTTACTCTCCAGTCAAATGAAATAACT
GGCAATAGAACAGGGGAGGTGGCTATGGACTTGAAGTGCCAGTCATTTAC
TATTTTACTGGCCCAGGAAAGCTTGTCAACTGGGTAAAGGAAAAACtgaa
ttaaaagcaaaatttggaagaaaaaaaacaaaaaatgcttgaaataaATG
GTTTAAAATCACTTATTACTTGTATCTTAATGTCGGAAACTATGTTTTCC
tcggtgtccgctaattggagggggaaaaacaggtttttgaccATTCCGTG
CAAAAATTTGTGTCCGCTAAATTGAGGTGTCTGCTAATTGAGTGTTcgcc
ttttggaaacttttttataaggatttgacaaggaaacggccggggaaaaa
tattttgtccgctaatcagaggtgtccgccttttagagtgtccgctaatt
ggagattCTACTGTAGTTATTTTATACAAACTGATGTTATCCCTTTTCAA
CTATCGTATTATCATGTAACACCCATTTACTGTATTCCacggattataaa
cgactcctgTTTCGTCACGTTTTGTAAATTGATTTATTCtagttattcat
gatatgcaccattgcaatgtcttccatagaccgaacagctgattggttga
aagtgacgtattgactgattttacgtcacaaTCAGCTGTTAGGTCCATGA
TGTAATTTCAGAAGACAATgcagtgttgcatatcatgaattaagtTGCTC
TGCTAGATATTTAGAAACCATGTTTTCCTTACCGCAGGCGGGAAAAACAA
GAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGACTTATACATGG
AAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGTTTTTGGTTTA
CATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCAAAGGTTTGTT
CCTTtcacacaatgttgtttcaatcttaataatttttttcccgcCGCTAT
TAAAAAATGTGCAAAGGTGACAGATTTCTAAATATAGAATAGAGCCTGAG
TAATCTTTGATAACAATAATTCGTCTCTCTCCAATCGAAATTTAAAGAAT
TGAGTAAATGAAATCGTGAGGTGTTTGGTGGTTGAGAAATTGTTTCGAGC
TTTACAATTGTTCAATAGCAACTTTGAGTAAGTAATGTCGAGTAAAAGAG
TCAAAAAGTAGGTAATCATGGAAGTTCCGTGGTctgatacacattttttt
tatataaacaaACTATATGAGAACACCAGGCCTCGATATTCAATATATTA
AGAACATTTTAAGGCTTTACGCACTCTAAAACGCCAAATATCTTAGAAAA
TTACAGAAAAATACGCCCAAAATGAATGGTGAAAACTTAAGAAGGGTTGA
AATTAAGCTTGAAATTCAAAGTTAAAAAGTTAAGAACGTTGGAAGGCTTC
AAAAAATTTGAATGCTCTTATAAAGAAATGTATATTCACTATCTACCCAT
CCTTTTCTCTTTCCAGACATGTGGACACAACTCGTTGAATTACAACCGCA
AACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGA
TTGCTGCAGACATCCAAGAGAAGTTACCAACACTTTATGACGTGAATGGT
TTCAGAAagaaattaggattagagatatcaCCAACGACTGTGGTCTTATT
ACAAGAGTTAGATGTGTTGATCAGGAAAATGGGCACCACCCTGATGAACC
TACAAAGGGTAAGTGTTTTGTTTTAGATTGAAAAAGTCTATATTTTACGG
CCATGTCGATATCTGTGGGTTGTTCTCTTAGGCCCCGTCACTTTAAACCT
AACAAAACACTAAAGAATTGAAAATAAGCGTGGTTTgaactattcatgat
atgcaccattgcgatgtcttctgacattacattacGGAGCCAcaaaagct
gattggttgtgGGTGACTTAGAAttagtcaatacgtcacttgcaaccaat
cagctgttgggtctgttgattgcaatggtgcatatcatgaataggggTAT
GTGGGTTGTAGCGCTGACGCAAATNgcaatggtgcatatcatgaataggg
gTATGTGGGTTGTAGCGCtgacgcaaattttttttccgtcagcggaCGTA
GACTTGATTTAGCGGCCGTAGACCTGAATTAACGaccgaagacctgaatt
aaacGGTCGAAGACCTGGATCAACGACTTTAGATAGGCATGAATACCATT
TACTTTATTATCTTTATAATTGTAATGTTTGATCTAAAATATAAGAAGCA
AATATAGTACATCCAATACCAggggcggtgcgacacccctgcaaaacatg
cactcgcagggtatgctccggagtcatttttgtcgcagcttgtttttagc
CTACCCGGAGTTGTTTTTCCGGATCATTCGTTAGtgtcattagatttatt
ttactgacttaaagtccgcggtaaatataagaaaactgttTATCAAGTCG
CGCTACAGGAAGCGTGAATTCCAGTCttcattttagattttgtgCACAAA
ACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaagacctggatg
aggtcaaaatgcagggtttgcccgggatttgatggctgttagtgacaaaa
cgttaaaagtcaagactcgtcaaatggctttagatgcttggagaagaaaa
aacagaatagacagtcctggttttatctattttgtcgcaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026595XLOC_026595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042796-exon-sc0003684-1491911889:8608..8910TCONS_00042796-exon-sc0003684-1491911889:8608..8910Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1510915933:8608..8910TCONS_00042796-exon-sc0003684-1510915933:8608..8910Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1575043694:8608..8910TCONS_00042796-exon-sc0003684-1575043694:8608..8910Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1491911889:9745..9900TCONS_00042796-exon-sc0003684-1491911889:9745..9900Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1510915933:9745..9900TCONS_00042796-exon-sc0003684-1510915933:9745..9900Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1575043694:9745..9900TCONS_00042796-exon-sc0003684-1575043694:9745..9900Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1491911889:10474..10715TCONS_00042796-exon-sc0003684-1491911889:10474..10715Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1510915933:10474..10715TCONS_00042796-exon-sc0003684-1510915933:10474..10715Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1575043694:10474..10715TCONS_00042796-exon-sc0003684-1575043694:10474..10715Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1491911889:11100..11700TCONS_00042796-exon-sc0003684-1491911889:11100..11700Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1510915933:11100..11700TCONS_00042796-exon-sc0003684-1510915933:11100..11700Clytia hemisphaericaexon
TCONS_00042796-exon-sc0003684-1575043694:11100..11700TCONS_00042796-exon-sc0003684-1575043694:11100..11700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003684supercontigsc0003684:8608..11700 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10309	2.05085	2.80896	3.5024	3.85763	5.50348	5.46215	5.26963	4.50138	4.27521	3.78325	4.38388	3.46579	2.34619	1.99216	2.19937	4.31756	2.80991	2.4976	2.32501	3.30848	3.25606	2.08234	1.62519	5.13291	6.31132	2.97215	2.46581	1.91567	1.99273
Blast
[Close]
BLAST of TCONS_00042796 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 1.005e-36
Identity = 68/117 (58.12%), Postives = 92/117 (78.63%), Query Frame = 3 
Query:  360 YMEVIEALPLANTPDVFGLHPNAEIGYSTTAAKDMWTQLVELQPQTGGDSGGKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQEL---DVLIRKMGTTLMNLQR 701
            ++E IEALPLANTP+VFGLHPNAEIGY T AA+DMW  L+ELQPQTG  S G SR+++IG++A +I+ K+P ++D++  RK+LG  +SPT+VVLLQEL   + L+ +M  +L  LQR
Sbjct: 4142 FVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIGQVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQR 4258
The following BLAST results are available for this feature:
BLAST of TCONS_00042796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH101.005e-3658.12Dynein heavy chain 10, axonemal OS=Homo sapiens GN... [more]
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