TCONS_00042795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042795
Unique NameTCONS_00042795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042795 ID=TCONS_00042795|Name=TCONS_00042795|organism=Clytia hemisphaerica|type=transcript|length=449bp
acacccctttctttaacacccctcgaataaacacccctcctgaaagtctt
aaaatcaaaaagacGCCCAGGACGTTTATTCGAAGAAATACGGTGGTTTT
TACAAAGTTAACAAGGgacaacatgttaagaatatctttaggctgaaacc
tcaaaaaaataagagtatccaaattcttaaaaaaaaagtgaaccCATCTA
TAGCAAGGTAAGCTCAAGATTCGGATTTTCTATTTATCTTATCGGTACAA
CCTAATAAAAAAGTACAATATCTATAATGAGATCTTCGATAGAACCTCGA
CTCGAGATAGTCGCACCTATgtaaactttattgattttgtagatatgGAT
TGCATTTCTTTACGCATTACagtgagataaagtaaaattcTATTGGTTGT
CTTTACCAACGCATGGAATAATTCATGATAAAAACTCCCTTTTCCTTTT
Run BLAST on NCBI

transcript from alignment at sc0003683:3949..4397

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042795 ID=TCONS_00042795|Name=TCONS_00042795|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0003683:3949..4397 (Clytia hemisphaerica)
AAAAGGAAAAGGGAGTTTTTATCATGAATTATTCCATGCGTTGGTAAAGA
CAACCAATAgaattttactttatctcactGTAATGCGTAAAGAAATGCAA
TCcatatctacaaaatcaataaagtttacATAGGTGCGACTATCTCGAGT
CGAGGTTCTATCGAAGATCTCATTATAGATATTGTACTTTTTTATTAGGT
TGTACCGATAAGATAAATAGAAAATCCGAATCTTGAGCTTACCTTGCTAT
AGATGggttcactttttttttaagaatttggatactcttatttttttgag
gtttcagcctaaagatattcttaacatgttgtcCCTTGTTAACTTTGTAA
AAACCACCGTATTTCTTCGAATAAACGTCCTGGGCgtctttttgatttta
agactttcaggaggggtgtttattcgaggggtgttaaagaaaggggtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026594XLOC_026594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042795-exon-sc0003683-1491911889:3949..4397TCONS_00042795-exon-sc0003683-1491911889:3949..4397Clytia hemisphaericaexon
TCONS_00042795-exon-sc0003683-1510915933:3949..4397TCONS_00042795-exon-sc0003683-1510915933:3949..4397Clytia hemisphaericaexon
TCONS_00042795-exon-sc0003683-1575043694:3949..4397TCONS_00042795-exon-sc0003683-1575043694:3949..4397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003683supercontigsc0003683:3949..4397 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.591296	0.576606	0	0.163749	5.38242	2.04787	11.213	14.7676	2.49137	2.46877	0.898593	2.9535	0.491565	0.408396	1.09121	1.62144	0	1.13742	0.31428	0.657743	1.57217	1.0457	0.84746	0.308186	1.90454	2.69129	2.63505	3.24484	0.984438	1.50448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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