TCONS_00042519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042519
Unique NameTCONS_00042519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042519 ID=TCONS_00042519|Name=TCONS_00042519|organism=Clytia hemisphaerica|type=transcript|length=1109bp
ctcaattaaagatacgtgcgagctgttatatatcttttgtcaaatgatgc
aattaacgtgcaaaagaaattaaagggattggaactcgtacaaacacatc
gagagtggctgcgtttagaccaactggcatttgtaatttggcatttcaTC
GACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGTTGGTTT
TATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCAGAAAAA
TTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTCgggtag
aaaaataaaaaacaacttgaAAATGAAGGAAACAGGGAAAGGAGCTCATG
ATCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC
AAGCCttattatcaaattttgttCCAGTAAAAGAGAGTGCCATGATCATC
TTCAAACCCAGTTTCTAATACAATTATGAAAGGTTCTTCATCCTCGCAGC
ACACAGGTGTCCATCCTGTTTACACCTGTTTACACGTGTCCATACACACA
GACGACAGAATACGAGCTGGaacaaaagttattttttatgaaCGTAGAGT
GTTGAGATGAAACATACAAGCTCTGTGGTGGTGGCGCATAGTGTGAAAAT
AATGCTTGTCTATTAGTTGTGAGCTTATGATCAACTTCTCACCTTGATTT
AACCATTGTCATacaagaagaaaaattatcatGTTGGATTTCAAATAAAA
CGTAATTGGCAATAAACTGAATTTAACGTGCAACTCCATTTTCCACCTGT
ATATATAGACAACGACAAAATTGAGTTCGGTTACCATGTTAGTGTGGTGG
ATGATCCTAGTAAAATACACAGTTATGAACTGCTTGACCGACATTcctcg
agaaaaaaaacatgcacaataaaaataaaaatcatcaTCAGGCTTTTGGT
ACTATATTTGTTTGCTGATAGATAGAAAAACTCATTATGGTTCCACAACA
AAAGGGGCAGAAATTCATATATGTGCATTCTTTGTTCTTTACAGTCACTA
GGTTTTAAGTTGTTGCCATCTGGTATCTTCAAATCCTTGAATACTGTTGA
ATATATAAT
Run BLAST on NCBI

transcript from alignment at sc0003472:1523..2990-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042519 ID=TCONS_00042519|Name=TCONS_00042519|organism=Clytia hemisphaerica|type=transcript|length=1468bp|location=Sequence derived from alignment at sc0003472:1523..2990- (Clytia hemisphaerica)
CTCAATTAAAGATACGTGCGAGCTGTTATATATCTTTTGTCAAATGATGC
AATTAACGTGCAAAAGAAATTAAAGGGATTGGAACTCGTACAAACACATC
GAGAGTGGCTGCGTTTAGACCAACTGGCATTTGTAATTTGGCATTTCATC
GACCTCTAACGGATGGACGGATAACTCATTGTTTTCAAGCGCGTTGGTTT
TATTGTTCCCGAATCAATAGAATGATCACGTGATCATTGCATCAGAAAAA
TTCGAGGTCTCGATAACCCAGTTGATGTAATTCTCCTGGATGTCGGGTAG
AAAAATAAAAAACAACTTGAAAATGAAGGAAACAGGGAAAGGAGCTCATG
ATCATGAAGGAAAGAAGCTGAAAATTGTATGGAATTGTCAATGAATTTTC
AAGCCTTATTATCAAATTTTGTTCCAGTAAAAGAGAGTGCCATGATCATC
TTCAAACCCAGTTTCTAATACAATTATGAAAGGTAGATAGATGTTTTGTT
TATTTTTCGTCTGATGTGTATTCTTTTTTATAAAATTATAACTTGATAAT
CTACAGTATTAGCATATTTTTGTATCATAAACTTAATGATATAAATACAA
AATACAGATCCTCACTCCAGTATCTAAACATCTGAAGGGAAATCTGAATG
TTTACATACATTTTATTTGTGAAGGTGGGGTTTATCATGCATGATCATCA
ATCAGAATCTTCCTTCCATCTCATTGAGATAAATACTATTATATATGTGA
AACTTCAACAAAAATCAGGAATTCCATCTATAATATCACAGCTTCTGCTA
ACAGTACACTTTCACTCATAAAATTTTGTCTTCATTTTCAGGTTCTTCAT
CCTCGCAGCACACAGGTGTCCATCCTGTTTACACCTGTTTACACGTGTCC
ATACACACAGACGACAGAATACGAGCTGGAACAAAAGTTATTTTTTATGA
ACGTAGAGTGTTGAGATGAAACATACAAGCTCTGTGGTGGTGGCGCATAG
TGTGAAAATAATGCTTGTCTATTAGTTGTGAGCTTATGATCAACTTCTCA
CCTTGATTTAACCATTGTCATACAAGAAGAAAAATTATCATGTTGGATTT
CAAATAAAACGTAATTGGCAATAAACTGAATTTAACGTGCAACTCCATTT
TCCACCTGTATATATAGACAACGACAAAATTGAGTTCGGTTACCATGTTA
GTGTGGTGGATGATCCTAGTAAAATACACAGTTATGAACTGCTTGACCGA
CATTCCTCGAGAAAAAAAACATGCACAATAAAAATAAAAATCATCATCAG
GCTTTTGGTACTATATTTGTTTGCTGATAGATAGAAAAACTCATTATGGT
TCCACAACAAAAGGGGCAGAAATTCATATATGTGCATTCTTTGTTCTTTA
CAGTCACTAGGTTTTAAGTTGTTGCCATCTGGTATCTTCAAATCCTTGAA
TACTGTTGAATATATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026345XLOC_026345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042519-exon-sc0003472-1575043694:2509..2990TCONS_00042519-exon-sc0003472-1575043694:2509..2990Clytia hemisphaericaexon
TCONS_00042519-exon-sc0003472-1575043694:1523..2149TCONS_00042519-exon-sc0003472-1575043694:1523..2149Clytia hemisphaericaexon
TCONS_00042519-exon-sc0003472-1510915933:2509..2990TCONS_00042519-exon-sc0003472-1510915933:2509..2990Clytia hemisphaericaexon
TCONS_00042519-exon-sc0003472-1510915933:1523..2149TCONS_00042519-exon-sc0003472-1510915933:1523..2149Clytia hemisphaericaexon
TCONS_00042519-exon-sc0003472-1491911889:2509..2990TCONS_00042519-exon-sc0003472-1491911889:2509..2990Clytia hemisphaericaexon
TCONS_00042519-exon-sc0003472-1491911889:1523..2149TCONS_00042519-exon-sc0003472-1491911889:1523..2149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003472supercontigsc0003472:1523..2990 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57326	0.211529	0.217938	0.613153	6.49446	3.85501	5.30705	6.1541	4.47352	5.82133	5.57333	4.34877	2.46939	2.98438	1.42185	1.42029	0.84034	1.19634	1.44083	2.50777	0.981413	2.78997	0.686258	1.50347	3.10789	3.90662	4.64698	4.42515	2.42963	1.7494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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