TCONS_00040833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040833
Unique NameTCONS_00040833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040833 ID=TCONS_00040833|Name=TCONS_00040833|organism=Clytia hemisphaerica|type=transcript|length=493bp
ATCTCAACCATATCACTTACCGCACGCCTATATTTTAGACTTGggattcc
aattctttgttgTCTGCTTTCATAACATAGTCGTCCACATGTTTCAACCG
TTTTTGTAGCGCGCCGCTGAACACCTTCTAtaagttttttgtgttttttt
agtTTCGGTGACCAAATGACTTGTGCATATTCTAGGTGGAGCCTGACAAA
TGTTATGTAAAGTTTACGGAATAATTCAGGAGTGAGATACGTGAAGGTTC
TTCTAATTAGACCAGCCATTGAGTTTGCCTTTTTTACTTGGTTTGATATA
TGTTGGTCGAATAAGAGATTTTGGTCAAAGATAACTCCGAGATCCTTTTC
GAATTGTACATGTTTTAGTAAATTTCCTCCGAGTGTGTATTGATGTACAT
GTTTAATTATATTCGGCTTACCTAACGTTAGTACATGACATTTGTcggga
tgaaattttaaaagctaCGTATCTGACCATTGCTGTAGTCGAT
Run BLAST on NCBI

transcript from alignment at sc0002584:11793..12285

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040833 ID=TCONS_00040833|Name=TCONS_00040833|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at sc0002584:11793..12285 (Clytia hemisphaerica)
ATCGACTACAGCAATGGTCAGATACGtagcttttaaaatttcatcccgAC
AAATGTCATGTACTAACGTTAGGTAAGCCGAATATAATTAAACATGTACA
TCAATACACACTCGGAGGAAATTTACTAAAACATGTACAATTCGAAAAGG
ATCTCGGAGTTATCTTTGACCAAAATCTCTTATTCGACCAACATATATCA
AACCAAGTAAAAAAGGCAAACTCAATGGCTGGTCTAATTAGAAGAACCTT
CACGTATCTCACTCCTGAATTATTCCGTAAACTTTACATAACATTTGTCA
GGCTCCACCTAGAATATGCACAAGTCATTTGGTCACCGAAactaaaaaaa
cacaaaaaacttaTAGAAGGTGTTCAGCGGCGCGCTACAAAAACGGTTGA
AACATGTGGACGACTATGTTATGAAAGCAGAcaacaaagaattggaatcc
CAAGTCTAAAATATAGGCGTGCGGTAAGTGATATGGTTGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024903XLOC_024903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040833-exon-sc0002584-1491911889:11793..12285TCONS_00040833-exon-sc0002584-1491911889:11793..12285Clytia hemisphaericaexon
TCONS_00040833-exon-sc0002584-1510915933:11793..12285TCONS_00040833-exon-sc0002584-1510915933:11793..12285Clytia hemisphaericaexon
TCONS_00040833-exon-sc0002584-1575043694:11793..12285TCONS_00040833-exon-sc0002584-1575043694:11793..12285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002584supercontigsc0002584:11793..12285 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91242	1.93478	1.95369	3.24379	1.49631	0.509871	1.0378	1.57886	0.781915	0.722556	1.64531	0.520179	1.04291	0.760281	1.71603	0.516896	1.03156	0.83588	1.80817	1.49981	1.60132	1.14133	0.323217	0.897213	0.670614	1.96641	63.0807	63.369	8.78373	10.3083
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top