TCONS_00036954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036954
Unique NameTCONS_00036954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036954 ID=TCONS_00036954|Name=TCONS_00036954|organism=Clytia hemisphaerica|type=transcript|length=741bp
GTGCAAGTAACCTAAATCATTGCGGATAGCGTCCAAACCAATGTGTGGCA
TCTAATTTACTGTGGATAGCATCCGAGCCAGTATGTGGAATCTAAATTAC
TGTGGATAGCGTCCGAGCCAGTATGTGGTATCTAAATTACTGTGGATAGC
GTCCGAGCCAGTGTGTTTTTATCTAAAGTACTGTGGATAGCGTCCTAGCC
AGTGTGTGAATGTTTGAGAATGTGCGGATCGCATCCGAGCATGTATCTGA
GGTATGAAATTACTGTGGATAGCGTCCGAGCCAGTGTGTAAATGTTTGAG
AATGTGCAGATCGCATCCGAGCATGTATCTGAGGTATGAAATTACTGTTG
ATAGCGTTCGAGCCAGTGTGTAAATGTTTGAGAATGTGCGGATCGCATCC
GAGCATATATCTGAGGTATTAAATTACTGTGGATAGCGTCCGAGCCATTG
TGTAAATGTTTGTGAACGTGCGGATCGCATCCGAGCATGTATCTGAGGTA
TGAAATTACTGTGGATAGCGACCAAGCCAGTGTAAAAATTTCTGATAGAA
CTGTTGGTAGCGACCAAGCCAGTGTAGAAATATCAAGAGCACCCAATACT
GTCCAAGAATGCCAATTATGATATCGATGTAGGTTGTGTTGGGAAGGGCT
AACTCAAAGGGTTACTAGTTGGGGGACGTGTTAAAGATTGCCATTGGATC
AGATGAGAAAACTGGACTGCAGTATATTGGTTGGAATAATG
Run BLAST on NCBI

transcript from alignment at sc0001543:16404..17144

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036954 ID=TCONS_00036954|Name=TCONS_00036954|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0001543:16404..17144 (Clytia hemisphaerica)
CATTATTCCAACCAATATACTGCAGTCCAGTTTTCTCATCTGATCCAATG
GCAATCTTTAACACGTCCCCCAACTAGTAACCCTTTGAGTTAGCCCTTCC
CAACACAACCTACATCGATATCATAATTGGCATTCTTGGACAGTATTGGG
TGCTCTTGATATTTCTACACTGGCTTGGTCGCTACCAACAGTTCTATCAG
AAATTTTTACACTGGCTTGGTCGCTATCCACAGTAATTTCATACCTCAGA
TACATGCTCGGATGCGATCCGCACGTTCACAAACATTTACACAATGGCTC
GGACGCTATCCACAGTAATTTAATACCTCAGATATATGCTCGGATGCGAT
CCGCACATTCTCAAACATTTACACACTGGCTCGAACGCTATCAACAGTAA
TTTCATACCTCAGATACATGCTCGGATGCGATCTGCACATTCTCAAACAT
TTACACACTGGCTCGGACGCTATCCACAGTAATTTCATACCTCAGATACA
TGCTCGGATGCGATCCGCACATTCTCAAACATTCACACACTGGCTAGGAC
GCTATCCACAGTACTTTAGATAAAAACACACTGGCTCGGACGCTATCCAC
AGTAATTTAGATACCACATACTGGCTCGGACGCTATCCACAGTAATTTAG
ATTCCACATACTGGCTCGGATGCTATCCACAGTAAATTAGATGCCACACA
TTGGTTTGGACGCTATCCGCAATGATTTAGGTTACTTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021831XLOC_021831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036954-exon-sc0001543-1491911889:16404..17144TCONS_00036954-exon-sc0001543-1491911889:16404..17144Clytia hemisphaericaexon
TCONS_00036954-exon-sc0001543-1510915933:16404..17144TCONS_00036954-exon-sc0001543-1510915933:16404..17144Clytia hemisphaericaexon
TCONS_00036954-exon-sc0001543-1575043694:16404..17144TCONS_00036954-exon-sc0001543-1575043694:16404..17144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001543supercontigsc0001543:16404..17144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26675	0.576038	0.453042	0.221615	1.12625	0.426392	0.257212	0.882928	0.168589	0.0779556	0.462108	0.399721	0.0887035	0.230299	0.0757347	0.16255	0.150186	0.359184	0	0.0741816	0.128954	0.0943492	0.0764626	0.0695156	0.381058	0.447305	0.182884	0.0975891	0.400886	0.226238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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