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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036068 ID=TCONS_00036068|Name=TCONS_00036068|organism=Clytia hemisphaerica|type=transcript|length=1328bp
TGTAAAgtgacttttatcaaaatatatttctaaaacaaaaataaaaagta
caaaatttaatttataaatcatgaaacaaaaatttgttgcNTACAAAACG
GATAACGTAAGCCATGATTCTGATAACAACTGTAAATTTGTGTTTCATTG
GATCCAGAAGGTACATGGAATATTCATACCGTGTCTTCATTTCATTGAGA
ATGCTTTCGGATGTGAACGAGACATAATGGAATGACTTCTCCCTTTGAAC
TTCTGATTGTTGCTGGGCTGTTAGCTTCAACTGGTCAGCAGATTGTGTTG
GAAATTGAGATGATGGCAAACGCATCCATGGTAATCCATTGATCCAATTT
TAAGACTGGTCAACATCCTTGATTTGAGCTCCTGGTCATGTACCAAGATC
AGCAATGTTGTCGTACGATTGAATGTAGGCCCACTGGTCCTTTGATGAAA
AACGATTGATTTCAATGACACGGTTCCGGACCCATTCCTTCAATGGCTTT
TGATCGTTACTGGTCCAATGTAATGCGATTTGACTGTCTGTAAACTTCTT
GAATGATACAACAAGTCCTTTGAATGACCTTTTGACGATTTCACTTGTGT
ATACATTCAATAACTCAGCATACAACTCAGCTCTTGGTAATGATGTCTTT
TGAACAGTTCTTGTGCGTGAGAAGACAAGTTGACAGGAATAAGGGCCATC
TTTGAGACGGAATTGTGCATAGATACTAACACATACCAAGCTTTGACTTG
CATCCCCAAAATCCAGAGTTTCGATTTGCATATCGACAGCATCCTTGGGT
ACGATTGATCGTTTGAAGCGGATGGATCCAATTTCTTGCATTGTTTCAAA
ATGATTGAGCCATACTTGTCGCAGCTCGTTGGGCAGGACATCATCCCATT
GAAGTNGCATCCTTGGGTACGATTGATCGTTTGAAGCGGATGGATCCAAT
TTCTTGCATTGTTTCAAAATGATTGAGCCATACTTGTCGCAGCTCGTTGG
GCAGGACATCATCCCATTGAAGTTGTCGTAGGTTTAGTTGTTGGAGGTCT
AACTTCGTTGCAGCAACACGAGGTGCAATCTTGCCAGTGAGGTCGTAGAT
CTCTGCAACCTTTGAGATACATTGACGACGTGTGAGTTTTTCAGGAATGA
TATTCAATCGATCTTGATTCTTCTTGTCTCTTGTCTTTTTGGAAAAGTTG
AGTTCAGAAATGTTAAGTGATACCTCATCTGTCTTTGGATAACATTTCAA
TCCTCCAACGATAATTGATTCACCATCATCAGTGAGGTCTGGTAGCGGAT
CTTCGCCAGTGAAAGTGACTCCTTTGAG Run BLAST on NCBI protein sequence of TCONS_00036068-protein >TCONS_00036068-protein ID=TCONS_00036068-protein|Name=TCONS_00036068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MMSCPTSCDKYGSIILKQCKKLDPSASNDQSYPRMXLQWDDVLPNELRQV
WLNHFETMQEIGSIRFKRSIVPKDAVDMQIETLDFGDASQSLVCVSIYAQ
FRLKDGPYSCQLVFSRTRTVQKTSLPRAELYAELLNVYTSEIVKRSFKGL
VVSFKKFTDSQIALHWTSNDQKPLKEWVRNRVIEINRFSSKDQWAYIQSY
DNIADLGT Run BLAST on NCBI transcript from alignment at sc0001409:37791..39118 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036068 ID=TCONS_00036068|Name=TCONS_00036068|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at sc0001409:37791..39118 (Clytia hemisphaerica)
CTCAAAGGAGTCACTTTCACTGGCGAAGATCCGCTACCAGACCTCACTGA
TGATGGTGAATCAATTATCGTTGGAGGATTGAAATGTTATCCAAAGACAG
ATGAGGTATCACTTAACATTTCTGAACTCAACTTTTCCAAAAAGACAAGA
GACAAGAAGAATCAAGATCGATTGAATATCATTCCTGAAAAACTCACACG
TCGTCAATGTATCTCAAAGGTTGCAGAGATCTACGACCTCACTGGCAAGA
TTGCACCTCGTGTTGCTGCAACGAAGTTAGACCTCCAACAACTAAACCTA
CGACAACTTCAATGGGATGATGTCCTGCCCAACGAGCTGCGACAAGTATG
GCTCAATCATTTTGAAACAATGCAAGAAATTGGATCCATCCGCTTCAAAC
GATCAATCGTACCCAAGGATGCNACTTCAATGGGATGATGTCCTGCCCAA
CGAGCTGCGACAAGTATGGCTCAATCATTTTGAAACAATGCAAGAAATTG
GATCCATCCGCTTCAAACGATCAATCGTACCCAAGGATGCTGTCGATATG
CAAATCGAAACTCTGGATTTTGGGGATGCAAGTCAAAGCTTGGTATGTGT
TAGTATCTATGCACAATTCCGTCTCAAAGATGGCCCTTATTCCTGTCAAC
TTGTCTTCTCACGCACAAGAACTGTTCAAAAGACATCATTACCAAGAGCT
GAGTTGTATGCTGAGTTATTGAATGTATACACAAGTGAAATCGTCAAAAG
GTCATTCAAAGGACTTGTTGTATCATTCAAGAAGTTTACAGACAGTCAAA
TCGCATTACATTGGACCAGTAACGATCAAAAGCCATTGAAGGAATGGGTC
CGGAACCGTGTCATTGAAATCAATCGTTTTTCATCAAAGGACCAGTGGGC
CTACATTCAATCGTACGACAACATTGCTGATCTTGGTACATGACCAGGAG
CTCAAATCAAGGATGTTGACCAGTCTTAAAATTGGATCAATGGATTACCA
TGGATGCGTTTGCCATCATCTCAATTTCCAACACAATCTGCTGACCAGTT
GAAGCTAACAGCCCAGCAACAATCAGAAGTTCAAAGGGAGAAGTCATTCC
ATTATGTCTCGTTCACATCCGAAAGCATTCTCAATGAAATGAAGACACGG
TATGAATATTCCATGTACCTTCTGGATCCAATGAAACACAAATTTACAGT
TGTTATCAGAATCATGGCTTACGTTATCCGTTTTGTANgcaacaaatttt
tgtttcatgatttataaattaaattttgtactttttatttttgttttaga
aatatattttgataaaagtcacTTTACA Coding sequence (CDS) from alignment at sc0001409:37791..39118 >TCONS_00036068 ID=TCONS_00036068|Name=TCONS_00036068|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0001409:37791..39118 (Clytia hemisphaerica)
ATGATGTCCTGCCCAACGAGCTGCGACAAGTATGGCTCAATCATTTTGAA
ACAATGCAAGAAATTGGATCCATCCGCTTCAAACGATCAATCGTACCCAA
GGATGCNACTTCAATGGGATGATGTCCTGCCCAACGAGCTGCGACAAGTA
TGGCTCAATCATTTTGAAACAATGCAAGAAATTGGATCCATCCGCTTCAA
ACGATCAATCGTACCCAAGGATGCTGTCGATATGCAAATCGAAACTCTGG
ATTTTGGGGATGCAAGTCAAAGCTTGGTATGTGTTAGTATCTATGCACAA
TTCCGTCTCAAAGATGGCCCTTATTCCTGTCAACTTGTCTTCTCACGCAC
AAGAACTGTTCAAAAGACATCATTACCAAGAGCTGAGTTGTATGCTGAGT
TATTGAATGTATACACAAGTGAAATCGTCAAAAGGTCATTCAAAGGACTT
GTTGTATCATTCAAGAAGTTTACAGACAGTCAAATCGCATTACATTGGAC
CAGTAACGATCAAAAGCCATTGAAGGAATGGGTCCGGAACCGTGTCATTG
AAATCAATCGTTTTTCATCAAAGGACCAGTGGGCCTACATTCAATCGTAC
GACAACATTGCTGATCTTGGTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036068-exon-sc0001409-1491911889:37791..39118 | TCONS_00036068-exon-sc0001409-1491911889:37791..39118 | Clytia hemisphaerica | exon |
| TCONS_00036068-exon-sc0001409-1510915933:37791..39118 | TCONS_00036068-exon-sc0001409-1510915933:37791..39118 | Clytia hemisphaerica | exon |
| TCONS_00036068-exon-sc0001409-1575043694:37791..39118 | TCONS_00036068-exon-sc0001409-1575043694:37791..39118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001409 | supercontig | sc0001409:37791..39118 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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