TCONS_00035897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035897
Unique NameTCONS_00035897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035897 ID=TCONS_00035897|Name=TCONS_00035897|organism=Clytia hemisphaerica|type=transcript|length=864bp
TTGGTGTTGAACCTCTTAATGTGACATGTTCaatttgtttgtttacattg
cgAGAACCAATGCAAGCTGAAGAATGTGGTCACAGATTTTGTAAAAGTTG
CGTGAAAGACCTTCAGAAGAGATAGTATCACTTCCAATTATTCCATTGAA
ATTTCTTGAAGTCTCAAAGTTTATCAAGATCCACTTCGAGTTACTAGTCT
ATAATTATTATCCATATTAGATTGTTTTACCTTTTGTACctcttttatgt
tgattttgtttatttatcttcAGTGAAAATGGCAACCCATTATGTCCTGA
AGACCGAAGTGAGATGGTTGTAAGAAAgaagttttgtttgtttctaTTAT
TTGAACAGTGTTCATAGTTTACCAGAGAGCTTTTGAGAATTGTAATGTAT
TTAATTCAGATAAAGTATTGACAAATTCTTTGATAGCATTTCCTTAGTTT
GAGACAACTGAATTATATCTTTCCTTTAGAATAGAGAGAGTAGAAGCAGG
TATTTTTTCTGGGAGACTACATTTCATTCATTTCTTTTTCCAGCTCTTCC
GTGACAATGGCAAACAaagagaaattttagatttggtaGCGCAATGTACG
TTTTCAAACAATGGTTGCAAATGGAGCAAGGAACTGCGTAATTTAGATAA
TCATCCCACTAACGAATGTGAGTTCCAACTTTTAAGATGCAGAAACTCGA
ACTGTAAAGAACAAGTTCAAAGGAAAAGTCTTTCCAAACATTGTATGGAG
GAATGTCAGTATAGAAAGTTGACTTGCGCCTTCTGTACTGTTCAATatgc
ttttcttttcgaaaaggTAATGTGTTTTATGGTATTCAAACTGACTCAAT
ATTTTGTTCCCTAT
Run BLAST on NCBI

transcript from alignment at sc0001386:24660..38267-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035897 ID=TCONS_00035897|Name=TCONS_00035897|organism=Clytia hemisphaerica|type=transcript|length=13608bp|location=Sequence derived from alignment at sc0001386:24660..38267- (Clytia hemisphaerica)
TTGGTGTTGAACCTCTTAATGTGACATGTTCAATTTGTTTGTTTACATTG
CGAGAACCAATGCAAGCTGAAGAATGTGGTCACAGATTTTGTAAAAGTTG
CGTGAAAGACCTTCAGAAGAGATAGTATCACTTCCAATTATTCCATTGAA
ATTTCTTGAAGTCTCAAAGTTTATCAAGATCCACTTCGAGTTACTAGTCT
ATAATTATTATCCATATTAGATTGTTTTACCTTTTGTACCTCTTTTATGT
TGATTTTGTTTATTTATCTTCAGTGAAAATGGCAACCCATTATGTCCTGA
AGACCGAAGTGAGATGGTTGTAAGAAAGAAGTTTTGTTTGTTTCTATTAT
TTGAACAGTGTTCATAGTTTACCAGAGAGCTTTTGAGAATTGTAATGTAT
TTAATTCAGATAAAGTATTGACAAATTCTTTGATAGCATTTCCTTAGTTT
GAGACAACTGAATTATATCTTTCCTTTAGAATAGAGAGAGTAGAAGCAGG
TATTTTTTCTGGGAGACTACATTTCATTCATTTCTTTTTCCAGCTCTTCC
GTGACAATGGCAAACAAAGAGAAATTTTAGATTTGGTAGCGCAATGTACG
TTTTCAAACAATGGTTGCAAATGGAGCAAGGAACTGCGTAATTTAGATGT
GAGATTAACTTTCACTTTAATTAACTTTAAAATTTAATATTGATACTAAA
ATATAAAAGTTTGCAAGATTTTAGGAATTGAATGGGATGTTCAATTAAAG
ATCCATACAGGTGGGTGGACGAACTTTTTCACATTAGAAAAAAAAAATGT
GTGAATACCCCCGATAAAATGGAAAAAAAAATTAAAAAGCCCTTTGAAAA
TTGGAGAGTGGACGAATTAAATCCAATCTGGAAATTTTAAAACAAGTTCT
TACCCCCTGAAAAAATGAAAAACCACTCTTAGATCCCCTGGAAATGTTCT
TCCACCTCCTGTATGGACATGGAATGGAATGGCCCAATGATAGACAACAA
ATTTGTTTGGAGTTGAACTACTAATCGTTTCATTTTGTTATTTAATTCTC
AAGCAAGGGATTTCATAATTGAAATGTACCATCAGTAACTTTTACTTGAA
CCTTTTGCAATATCAATAATGTTTCAACTGATTTCCTTTTTAGAATCATC
TCACTAACGAATGCAAGTTCCAACTTTTAAGATGCAGAAACTCGAACTGT
AAAGAACAAGTTCCAAGGAAAATTCTTTCCAAACATTCTATAGAGGCATG
CCAATATAGAAAGTTGACTTGCGCCTACTGTGCTGTCCAATATGCTTTTC
TTTTCAAAAAGGTAATGTGTTTTATGGTATTCAAACCTGAGTCAATATTT
TGTTCCCTATAGACTTTTTATCGATTTTCGAAAATATTTCTTAACTTTAA
TCAAAGTTTTCTATATATGAAAAGTCCCATTTTAAATCGTGTTATTCACT
CCCTAGGTTAGTCTTTAATAAACTTTTAGCCAGTACAAGTTTTAGAAATC
CGTTGTTAATTTATTTTTCTATTGCTTTTAAGGAGCATGTAGAAGTTTGC
CCCGAGGTTCCAAAAAATTGCAATTACTGTCCTCGATAAGACATTCCAAG
ATCAAAGGTTTGAAGGTTTGATTCTTTTCTCATCAGTAAGGTTCAAATAA
AGTTTAGATTGGCATGAGAAACAGGCGATTTCGGTTATGTTGATTTCATT
TTTGTTACTTTTTCACATTTAGATGGAAGCTCATATTAAACAAGACTGCA
AAGGAATACTTCACCCATGTCAATTCGCTTGGTTAGGTTGTAAAGAAAAG
GTTTTAATTTCTTTCCTTGATTATCGTTGATTAAAACTATATTTGAAATA
GTTGTACTTTTGTGAGATTCTCAAACTATGTTTCAGCAATGCTTTTTGGA
TTAATGTTGTTATTTACTTTTCAATTCTCTCATTGTAGGTTATTTTTGAA
GAATCAAGAAATCACGATAAAGAAGACGTTTCACAACATTTAAACCTGGC
AATAAATACCATCAAATCTCTGCAACTTCAAAACAAAGCTCAAGACGAAG
AAGTTAAAGCTCTTAAAGAAACGCAAGCAGCCATCTTTGATAGATTGGAT
GGTCTTGAAAATACAGAGAAAGAGGATTCACCCTTCACTAATGAGTACAC
GTGGAAGATTTATAATTATCAAAAGAGAGTTGACAGGTCTGAGTATGACT
CTGACTACATGCTCACTAGATCCTTTTTATACACTGAAAGGACATAAATT
AAAGGTCAATCTCAACCCTAACGGTTACAAAGATCTGTTCAATTCACACG
CTGCGATATATTTTCAATCGGATGAAGGCAGTTTTGACGACACCTTAAAA
TGGCCTATGAAAATACTCATTGAGTATTCAGCGGTCGATGAGAATGGTTT
AGCAGTGTACAGCAATTCCTTTGATACTTGTTATGGTGTTGGCAATAGCT
TCCAGAAACCACCCCATTGGGATGATGGCTGGGGAAGCAATGATTTCTTT
CCCGTTAATTACGCCCCTATAAAACATAATACTTTGATATTGCCAATCAA
AATCACTTATCTGTGAAATGATTGTGTGGTTTTTAGAGATTCTTTTTGTG
AAAACTTTGCTAGAAAGTTGATTTCTACTTGTTAATAGTTTATCGTTTGG
TATTGTATTGGGCTCTTCCAGAAAATCTTTGTACATGGGGGTGGAGGATA
TATTGGTTATTTTGTCCGGGAGGTAGTGAAAAGTCTGCAAAATCTAATTT
GTTTTTGGGGCAAACTTGCTCTGTTTAGGGTTAAATTTCGCCGGGGTTGA
TAAATTTTCAAAAAATGTTATATCCTCCAGCCCCCATATTCAATTTTTTT
CTGGAAGAGCTCATTCATTATTTTGTCATGTGTTTGTATTTTATTTCGTC
AAAACTCAGACACTAAGGTTCTCGGAATATAATTTTCTTTATATACCGTA
TTACTTCGAATAAACGCCCGGGGCGTTTATTAAATTTTTACGATTTTAGC
AGGGGCGTTTATTCGAGGGGGCGTTTATTAAATTATTTGAGTCTAACGTC
GAATATTTTGGGAAATCTACTCTTTATTGGACCTACCCCGGTGGGGTGGA
GGTCCTATAAATTAACCCATGTTCGTTCGTTCGTTAGTGTGTTAGTTACC
AGCTTTTCTCGAGATTGGCTCATTAGTTNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACC
ATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAAAATTTTTTG
GGCAAATTTGGGCCAAAAAACGGCTTAAAAACGGGTTTTTTGGACTTTAT
GAAAAATTAGATCATTAATTTTTTCTGATTTTTAGCATGAAAGTAGGGTA
CAATCTTAGTTAAAGGATGACTCAAGCAGATTTTTGCAAAAAAATTTTTT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTATTTTGACCAGTTA
TGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCA
GGTAGGTCCATAAAAGTATCGCTTGTTTTAGTTCTATATCAAGATTTCCG
TGCAGATTTCTTTGGTTTTGGTGACTAAAATTGCATCAAAACTACTCTAG
TTACAAAAAATGACTAATATCTTCCTTCAATCCCAATAAATACTTGTAAT
AAAATATTAAAATCACAAGTTTCTAATAAACGCCCCTCCCTTAGAAGGGG
CGTTTTATTATTATTATTTATTATTTATTATTAATTGTATTTCAGGCACT
TCCATATATCTCAATGGCTATTCGTCCTATTTATAATAATAAGTAAACTA
AATAAATAAATAAATTATTATGTAAAAAAAAATTATATATAATTTTCAAA
TTGCAAAAATATACGTACGACCAAAAGTTGATTCGCTCAATTGAGATCCA
AATCATAAAATGAAGCTTGGATAAAATTTTATTCGAAGGTGGCNAAACTA
CTCTAGTTACAAAAAATGACTAATATCTTCCTTCAATCCCAATCAATACT
TGTAATAAAATATTAAAATCACAAGTTTCTAATAAACGCCCCTCCCTTAG
AAGGGGCGTTTATTCGAAGGGGGCGTTTATTTGAGGGGGCGTTTATTGAA
TAATTTTCCTTTTAGGAGGGGCGTTTATTCGAGGGGGGTGTTTAAAAGAA
GGAGGTCGTTTATTCGAAGTAGAACGGTATTCTACAATTCAATTCAAAAC
CAATCTATGACTATTTCATCACATTGTAAATCTTTTTCTAAAGCTTTTTG
TTGGAACAAATCTCAGCTTAAAGCCATTGACCTTTTACATAGTTATAATG
TATGTTGATTCGGCAGATTGAAATAAATAGAATCTTTTGTAATGAATAAA
GAAAAATGTGGAGCACTAGATTTATTTTTTCCTTTTATTTACAAATTTGA
AAGGACTCTTTTATTAAAATTTTGCTGACATCAGTTTCAGACGAGTGNTA
TAAGAACATAAGGCTTCGATGGCAAAAATATTAATAATAAGTTAAAATGG
TCTTTTTAAGGCTTTGCGGACTCTAAAAGTTCCAATTTCTTAGGAAAATG
GACAAAAATACTCTCAAAATGGTGAAATTAAGAACATGTTAAGAACATTT
TAAGACCTAAAATTCAAAAAGTTAAGAACATCCGAACGCTTATAAATTTC
AGATGTTCTCATAAAAAAACGTGTATGCACGATTCAAGACAACTGTTTGT
TTAAAATGTCTTGCCTATTTTTTTTTCAGTGATAATGGAAAACCTTTGTG
TCCAGAAGACAGGAGTGAAATGATTGTAAGATTTTTATGTTCTTATTTTA
AGAAATCGAATTAGTAGACTATACGAACTACTTTCATGGGATTAGTTTTG
CGAGCTCAAAAATCACTAAATTTTAAGCATTATTTTCGCGAGTCACTTTT
GATTTCATTTGATTTTGCGAATAAGTTGAAATCAGCAGAAAATGGCCTGA
ATGTATTTACTTTTTTGAAAATGCAGTTGTGAAAATTTTGAAAAATTGAA
AACTTTTTCAATTAACATATAATTTAAAAAGAAATTCTCTAGTTTTGTAA
ATTCTTTGTCTTTAATATTCTTCGATTTTTCTTTTCAAGCTATTCCAGGA
CAAAGGAAAACAAAGAGATATCTTGGATTGTCTTGTTTTATGCACTAACT
CGGAAGATGGTTGTCTGTGGACTAAAGAGTTACGATACTTTGAGGTATTG
CTCAGGGTATTTAAATAGCGAAAATAATCCATGGCACATAAAATTAGTTA
CACATTCTCTTATCCTTCCAAACAATAAATGTATTATTTAAGAACAATGC
AATATACAGCATATTTTCAGCCTTAGCTGAGATTACTGAATTATTGAATT
ATTATTATTAACTAGAAGTACTTCGCAGTGAAAACTTATATTTTAGATTT
TTTTAGCCATCGTGGCTGACTTTGAAAAATTAAGCTTTTATAAAAATATT
GTAAACACAAGTGTATAAAAAAATGTGTAATCGAATCCTCGTAGGATTCA
TAATTGTTCCATTTTGTAATAAATAAATATTATTTTTATTTCGTACCTTT
TTTTCGTTATAGGATCATACCAAGGACGAGTGTCCATTCACGCTTTTAGA
ATGTACAAATCAAGGGTGCACTGATCAAATTCAACGACAAAATCTGTTTC
AACATTGTAATGAGTTCTGTCTATACAGAATGAGCACGTGTGCTTTCTGT
TCTTTGGAGTTTGCCTTCAATTTATCACAGGTATATTTTTATATAAATAT
AAGTATAAATTATGCTAGGCGAATATTTCTTTGGATAGACTTTGACTAGA
TTTTGGGTTTAGTTCATAAATCTTCTCTTTTGGAACTGTGGATGTCAATC
TTCTGTATTGCCTTTTACTACCTACGATAAAGTAATCTTTGTTCGACCGT
ACGTTCGTCCTGCGAAAACGTTGACGATTGATTAATAGGGAATTTCCAAT
AACTTCTCGACTCAAACGACTTAAATGATCGCATCTCTTTTTTATCTTTT
CAATTTTTAGGAGCACAATTTAACCTGTGAAGAATATCCATCTAATTGCG
AATTTTGTTCCCAGGAGGATGTATTAAGATCCAAGGTTATCTTTCTTCTT
TCTTGTTCGTAGAAGAGACTTTTTAATGAAATCAACTTCACTTTAGTGGC
ATTACTAGTTCGATTGCTCAATACACAGGTTGCAAAATTAAAGTCTGAAG
ACAAATCACGCTTTTACTCGAAATTTTCATGTGATTGTTACATGNNNNNN
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CCATAAGTGAACTTTTAATTAAGTATGGATGTTTTGATAAATCTGAATTG
ATAAAAATGTCAAAAATCAATGAATTTATCTAAATGAAGATGTAAGAGGA
ATTTCAACGACTGTTATACAAAATTAAAAGCGGAGTTTGTTAATATTCCT
TTTAGGGCGTAATTGATCTCTACAAAAAAATTGTTGAGCACCTTATGCCA
ACAGCCTTTGCGTTGAATCTCTTTCTGTTCTTTGATCAAAAATTGCCAAC
TAAGGAAAAATTTTTTACACTAAAGGGATTGGTTTTTGCGAAGATTATAT
TTCATCACTTTCGCNGCGTTGAATTTCTTTCTGTTCTTTGATCAAAAATT
GCCAACTAAGGAAAAATTTTGTACACTAAAGGGATTGGTTTTTGCGAAGA
TTATATTTCATCACTTTCGTGAGTTTTCCCGAAAATTCGCGAAAATTAAC
CCTTGCGAAATTCCTTTTTGTCCAGTCTACTGGGCCAGCAGCAGAACTCT
GGCATATTTTTAAGCAAAGCATAATTTGATAGTGGACAAGCTGTCTTAAT
CATTTTATTTAGGGGAGTGCCCTTAATGTAAGGGGGTAAGGGCCACAATT
TTGCATTTGTTACTTTTCTATACCATATGTATCATGGTGCTACATGAACA
GAGCCAGTGTTTAGATTGTATTCATATTGAGAAAAATGAACACTTTGTTT
TATGATGACTACAAAGGACCCATTCTTATTTTTTAGAATAAAAGGAAATA
TAAAAAAATAAATAAAAATGGCAGAGAAAGGTGGTTATGATGTAAAATTT
GTTGGTGTTGAACCTCCCAATGTGACATGTTCGATTTGTTTGTTTACATT
GCAAGAACCAATGCAAGCTGAAGAATGTGATCACAGATCTTGTAAAAGTT
GTGTGAAAGACCTTCAGAAGAGGTAATATCACTTCCAATTATTCCATTGA
AAATTCAAGTCTCAAAGTTTATCAAGATCCACTTTGAGTTACTAGTCTAA
AATCTTATCCAAATTAGATTTTTTTTACCTTTCGTACCTCTTTTATGTTA
TTAATTTTGTTTATTTATCTTCAGTATTTTTTCATGGCTTGGCAGCAGGT
TTTAGGTGCCCCCTAAGAATTCAGGTGACCCCTAAGATTTAGGTAACCCC
TGGTTGCCAAATATTTTAGGTGACCCCTAAGCCANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATATGAAAGTTTAAAAGATTTTAGGAATTGAATCGGATGTTCAATTAAAG
ATCCATACAAGGGGATGGACGAACCATTTCACATAAAAAAAATTCTTAAA
ATTGTGTGAATACCCCCTGTAAATTGCATACAATTTCAAAAAGCCCTTGG
AAAATTTCTTTTCCTACCTTTTAAGTTAGAGTGCTAATTTTATTCTGGAA
ATTTTAAAACAAGTTCTTACCCCCTGGAAAAATTAAAAACCGCTCCTTTA
GACTCCCTGGAAATGTTCTTCCACCCCCTGTATTAACATGGAATGGAATG
GCCCAATGATAGACAACAACTTTGTTTGGAGTTGAACTACTAATCGTTTC
ATTTTGTTATTTAATTCTCAAGCAAGGGATTTCATAATTTTTACTTAACC
CTTTTGCAATATCAATAATGTTTCAACTGATTTCCTTTTTAGAATCATCC
CACTAACGAATGTGAGTTCCAACTTTTAAGATGCAGAAACTCGAACTGTA
AAGAACAAGTTCAAAGGAAAAGTCTTTCCAAACATTGTATGGAGGAATGT
CAGTATAGAAAGTTGACTTGCGCCTTCTGTACTGTTCAATATGCTTTTCT
TTTCGAAAAGGTAATGTGTTTTATGGTATTCAAACTGACTCAATATTTTG
TTCCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021080XLOC_021080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035897-exon-sc0001386-1575043694:37620..38267TCONS_00035897-exon-sc0001386-1575043694:37620..38267Clytia hemisphaericaexon
TCONS_00035897-exon-sc0001386-1575043694:24660..24875TCONS_00035897-exon-sc0001386-1575043694:24660..24875Clytia hemisphaericaexon
TCONS_00035897-exon-sc0001386-1510915933:37620..38267TCONS_00035897-exon-sc0001386-1510915933:37620..38267Clytia hemisphaericaexon
TCONS_00035897-exon-sc0001386-1510915933:24660..24875TCONS_00035897-exon-sc0001386-1510915933:24660..24875Clytia hemisphaericaexon
TCONS_00035897-exon-sc0001386-1491911889:37620..38267TCONS_00035897-exon-sc0001386-1491911889:37620..38267Clytia hemisphaericaexon
TCONS_00035897-exon-sc0001386-1491911889:24660..24875TCONS_00035897-exon-sc0001386-1491911889:24660..24875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001386supercontigsc0001386:24660..38267 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.866406	0.909815	0.794417	0.331858	0.365219	0.173161	0.905281	0.78232	1.78807	1.22298	2.34159	1.89904	2.26295	2.21922	3.93758	6.28919	2.82973	3.35156	2.81608	3.02862	2.39026	1.40744	1.82678	2.09253	4.18709	4.6711	2.19081	1.88811	0.769065	0.677895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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