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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00033600 ID=TCONS_00033600|Name=TCONS_00033600|organism=Clytia hemisphaerica|type=transcript|length=975bp
NNACATATTGAAAATGCAAGGAGAGGAGCGACTACCAAAAGGAAGGCAAA
GATCGAAGAAGTACTTACCCTGCCAGCAATATCCCAGGAGGGGCCAATCG
TCTGGGTGGACTGGGCAGAGGTGAAAGGCGTGCTTGATGTCGATTTTTCC
CATGTAGCAACCAGGGCCCATCAAACGGATCATGTCAAGGGCTTCGTCGA
AGGGGGTATACTGGACATGGGTCAGTTCTACAGGGATGCCATCATTGACA
GATGAACCAGGGGGGAAGGACAAGTCGAGGATGATCCGTTTTGTTCCATC
TTTTTTGGGGGCAGCACCGAGGGGGGAACAAAAAAAAGAGGGGAGGGAGT
GGGTGTCAAAAGGGCCAGCAGTATGCCCACGCTTCAATTCCTTCAGGATG
GCTGTAGAGACAGCTCGCAGTTGGAATCTGCTGAAAGGTTGTTACGTTCA
GGGCCAACTGGTGGTGGACCTTGGAAGCCAATGTGAAAACCTGTAAGGAA
CCCAGACACAAGAAACTCGACGATCTCAGGGTCATACCCGTCGAGGAACT
CAAACAAGACAAGGGGTTTAACAGGGGAAGCTGGCTTGAAGGAAGAAGGG
AGAGAAGAAACTATTGGGAGGTTGAGAAGAATTTGGTGATCACTGGGGGC
GGTAGGGACATTGCATGACAGGATGGGGATAGTTGCAGATGAGGCAACTG
TGGAGATATCGACAGGAGGGTCGACACTGGATGTTGGAGTTAAAGTTGTG
GCAGTAGTTGGCAGGTTTGGCGGCAGAGGCAGCTTGCTGGGGGGCAGGAA
AGGGCTAACGAAGGTTAGGGTAGGGCTGGTAGTACTGAGCACAGGGAAAA
GATGGGGGGCGAGGGCGGGGTCCAGGTTAAGAAGGCATCCGTGGGGCAGG
AAAATGGTGCGCTGTCTGAGAAACAGAAGAAGGGCGGGCAAAAGAGGTGG
AGGGGGCAGAAGAGGGGCAGCGGGG Run BLAST on NCBI protein sequence of TCONS_00033600-protein >TCONS_00033600-protein ID=TCONS_00033600-protein|Name=TCONS_00033600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
PAAPLLPPPPLLPALLLFLRQRTIFLPHGCLLNLDPALAPHLFPVLSTTS
PTLTFVSPFLPPSKLPLPPNLPTTATTLTPTSSVDPPVDISTVASSATIP
ILSCNVPTAPSDHQILLNLPIVSSLPSSFKPASPVKPLVLFEFLDGYDPE
IVEFLVSGFLTGFHIGFQGPPPVGPERNNLSADSNCELSLQPS Run BLAST on NCBI transcript from alignment at sc0001066:45178..46152 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00033600 ID=TCONS_00033600|Name=TCONS_00033600|organism=Clytia hemisphaerica|type=transcript|length=975bp|location=Sequence derived from alignment at sc0001066:45178..46152 (Clytia hemisphaerica)
CCCCGCTGCCCCTCTTCTGCCCCCTCCACCTCTTTTGCCCGCCCTTCTTC
TGTTTCTCAGACAGCGCACCATTTTCCTGCCCCACGGATGCCTTCTTAAC
CTGGACCCCGCCCTCGCCCCCCATCTTTTCCCTGTGCTCAGTACTACCAG
CCCTACCCTAACCTTCGTTAGCCCTTTCCTGCCCCCCAGCAAGCTGCCTC
TGCCGCCAAACCTGCCAACTACTGCCACAACTTTAACTCCAACATCCAGT
GTCGACCCTCCTGTCGATATCTCCACAGTTGCCTCATCTGCAACTATCCC
CATCCTGTCATGCAATGTCCCTACCGCCCCCAGTGATCACCAAATTCTTC
TCAACCTCCCAATAGTTTCTTCTCTCCCTTCTTCCTTCAAGCCAGCTTCC
CCTGTTAAACCCCTTGTCTTGTTTGAGTTCCTCGACGGGTATGACCCTGA
GATCGTCGAGTTTCTTGTGTCTGGGTTCCTTACAGGTTTTCACATTGGCT
TCCAAGGTCCACCACCAGTTGGCCCTGAACGTAACAACCTTTCAGCAGAT
TCCAACTGCGAGCTGTCTCTACAGCCATCCTGAAGGAATTGAAGCGTGGG
CATACTGCTGGCCCTTTTGACACCCACTCCCTCCCCTCTTTTTTTTGTTC
CCCCCTCGGTGCTGCCCCCAAAAAAGATGGAACAAAACGGATCATCCTCG
ACTTGTCCTTCCCCCCTGGTTCATCTGTCAATGATGGCATCCCTGTAGAA
CTGACCCATGTCCAGTATACCCCCTTCGACGAAGCCCTTGACATGATCCG
TTTGATGGGCCCTGGTTGCTACATGGGAAAAATCGACATCAAGCACGCCT
TTCACCTCTGCCCAGTCCACCCAGACGATTGGCCCCTCCTGGGATATTGC
TGGCAGGGTAAGTACTTCTTCGATCTTTGCCTTCCTTTTGGTAGTCGCTC
CTCTCCTTGCATTTTCAATATGTNN Coding sequence (CDS) from alignment at sc0001066:45178..46152 >TCONS_00033600 ID=TCONS_00033600|Name=TCONS_00033600|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0001066:45178..46152 (Clytia hemisphaerica)
CCCGCTGCCCCTCTTCTGCCCCCTCCACCTCTTTTGCCCGCCCTTCTTCT
GTTTCTCAGACAGCGCACCATTTTCCTGCCCCACGGATGCCTTCTTAACC
TGGACCCCGCCCTCGCCCCCCATCTTTTCCCTGTGCTCAGTACTACCAGC
CCTACCCTAACCTTCGTTAGCCCTTTCCTGCCCCCCAGCAAGCTGCCTCT
GCCGCCAAACCTGCCAACTACTGCCACAACTTTAACTCCAACATCCAGTG
TCGACCCTCCTGTCGATATCTCCACAGTTGCCTCATCTGCAACTATCCCC
ATCCTGTCATGCAATGTCCCTACCGCCCCCAGTGATCACCAAATTCTTCT
CAACCTCCCAATAGTTTCTTCTCTCCCTTCTTCCTTCAAGCCAGCTTCCC
CTGTTAAACCCCTTGTCTTGTTTGAGTTCCTCGACGGGTATGACCCTGAG
ATCGTCGAGTTTCTTGTGTCTGGGTTCCTTACAGGTTTTCACATTGGCTT
CCAAGGTCCACCACCAGTTGGCCCTGAACGTAACAACCTTTCAGCAGATT
CCAACTGCGAGCTGTCTCTACAGCCATCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00033600-exon-sc0001066-1491911889:45178..46152 | TCONS_00033600-exon-sc0001066-1491911889:45178..46152 | Clytia hemisphaerica | exon |
| TCONS_00033600-exon-sc0001066-1510915933:45178..46152 | TCONS_00033600-exon-sc0001066-1510915933:45178..46152 | Clytia hemisphaerica | exon |
| TCONS_00033600-exon-sc0001066-1575043694:45178..46152 | TCONS_00033600-exon-sc0001066-1575043694:45178..46152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001066 | supercontig | sc0001066:45178..46152 . |
Blast
The following BLAST results are available for this feature:
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