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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00033524 ID=TCONS_00033524|Name=TCONS_00033524|organism=Clytia hemisphaerica|type=transcript|length=2347bp
TGAAGGTTTGTCGTCATGTAACAGTTTGATTTCAGACACACGATTTATGT
TAGGATCTAGTTCATGCACAATGGGggagaaattgaattttgaaatggcA
TATCAGTTTTGCAGACGCAATGGTAGAGAACTTGTTAGCGTAGAGAGCCT
TCACCGtaaccgagatttgaactcgttTCTCTTGGTTCATTTACCGGCAC
TTTTAGAATCCTCAACCGTCATGATTGGCTTGAATTACAGGAGTTCATTA
TCAAAATTTCGTTGGATTGATGGTAGTACTTCAGTGTATCGGGACTGGTG
CTCAAACCAANATTTCGTTGGATTGATGGTAGTACTTCAGTGTATCGGGA
CTGGTGCTCAAACCAACCCAATCTTGAAAATGGACTTTGTATTGGATTCC
AAATTAATCCATCAGGGACTGAAGACAGAGGTTGCTTCAAAAGTATTGAT
TGTGACGAAATACATGACTTTGTTTGTCAACTACCCGGCGTAGATTTAAA
GAAATCTGTGGATACGATAAAAAGAACGCTAACTAAAGTTAAAAAAGATT
GTCACCGTTGTAGAGATTAGAAAAAGATGATAAATGCATGGTAGATTAGT
AGAATGTAATATTGAATGTTTCACCATCATTGTTCCTGGGGAATTGTTGG
AgaatatgaaaaattttgaagctcAATTTCATTTGTTCACAGACCCATTG
GGTTTGGATTTCCAACCCACTGGTATATTTGGCTAAAATATTGTCCCTGA
TGGGAAAAATATCCACCAATCTCAGTCCCACTTTAGattgactttgtttt
tatccccatttgaagtccaatgaaaaaaattgtactccaaaccCATCCGA
TTGgatttttttatctaagtaCTACATTCTCACCTATCCCCGTTTGGATT
TCgataaaattttcattcatgCAATAGGAAGAAGTTCCACggaggctgtg
agacagggatgtgtttttttgcttaaaataaagaatttgcAATACCAGGA
CGACTAGACTTGAAGATTTGATAAAGAGCACTTAATCAATGATaatattt
aaatcatttttattattCTCTTTTCATTAAAACTATACTAATTATTTATT
ATTCATAACTTTATGAGAAAAATGTACACTTTCAGTATATtatatttctt
tcatttcataaattttcataaataaaCTTACTCCATATTAAATAATAGCT
TAGGATTTAATATTTTTCGTTCGTAGCCTCAAGTTAGCAGATAATCACCC
CTAATTGCAAGTAATCTAAAAACTAATCTGGGTGTTATTAAAAGGCCCTT
AAAAATCAACTAGACTGGTACCAAAGACGATAAGACTCTTCATTTTTAGG
AAGTTAGAAAATTAACAAATGCTACATGTTTTATTGGTGATCTCATTTTT
CTTGATAATAGTCTTTTTTTCATTGTGTAGAACCAATCATCAGATTTAGG
ACATAATCCTACCCACAGTATTTGACTTCTACAGTATGATTCTACTGttt
taagttcaaaatatttttagggtatCGTTCATGACAGTTTGGTAGTTTGA
TCATGGAGGTGTCTACTCGGACACTGCAACTGGCTTCTTTACAACCTTAA
CAGCTGCAACAACTTTTGGTTTAGCTTCTTCAGGAGAAGCGATTGTTTGG
CTTTCTACATGGGCAGGTTCGTCTCCATATCTAGCAGCAAGTGGTGCAGC
ATCACGTCCAAACCGACCATTTAACCATTGATCTGCTTCTCTGCCAAAAC
GTCCATTCAACCATTGGTCAGCCTCACGACCGAATCTACCATTGAGCCAT
TGTCCCATTTCACGTCCAAATCGACCATTCAACCATTGTCCAGCCTCACG
TCCAAAACGGCCGTTTAACCATTGTTCAACTTCGCGTCCGAAACGGCCGT
TCAACCATTGTTCTTTTGCCTCTCGTCCGAATCTGCCATTAAGCCATTGG
TCAGCTGCTTCACGTCCAAAACGACCATTTAACCATTGATCAGCTGAAGC
TTCTCGACCGAAGCGACCATTTAGCCATTGGTCGGCAGAACGTTTTCCGA
AACGGCCGTTAAGCCACTGGTCAGCAGACCTTTTACCGAAACGGCCATTT
AACCATTGATTGGCAGATCTCTTACCAAAGCGTCCGTTAAGCCATTGTTC
TGCAGCATCGCGGCCAAATCGTCCGTTCAGCCATTGCTCAACTTCACGAC
CGAATCTTCCATTCAACCATTGATCAGCTTCACGTTTACCGAATCTACCG
TTCAACCACTGTTCCGTTGCTTCACGCCCGAAACGACCGTTCAACCATTG
TTTCAACTCACGGCCAAATCTACCTGATACCAGTTGTCTCTTTCCAA Run BLAST on NCBI transcript from alignment at sc0001065:23373..26625+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00033524 ID=TCONS_00033524|Name=TCONS_00033524|organism=Clytia hemisphaerica|type=transcript|length=3253bp|location=Sequence derived from alignment at sc0001065:23373..26625+ (Clytia hemisphaerica)
TGAAGGTTTGTCGTCATGTAACAGTTTGATTTCAGACACACGATTTATGT
TAGGATCTAGTTCATGCACAATGGGggagaaattgaattttgaaatggcA
TATCAGTTTTGCAGACGCAATGGTAGAGAACTTGTTAGCGTAGAGAGCCT
TCACCGtaaccgagatttgaactcgttTCTCTTGGTTCATTTACCGGCGT
AAGttgatttaaatttaaattctcTTTTTCCATTgcatactttaggcgta
caaactttcgcgagcagaaactttcgcgaggacgaaaaattgcgaaattc
acgacatttactttggcgaatttaacggaaaaatatttttcgcgagcata
aactttcgcgaatcaagacgtaaaattgagaaaattgaaaaaatagctta
gagggagaaatacttcttggattgactttcaaacatttgtcctttgactt
attagtcatttagcaggctaaaaagtgccataaagttacatttttatcaa
aatttgaagttttacagattttctattttgtcaagggtttttcgcgagca
ttaactttcgcgaatggcccttcctagaatttttaaatacatttactttc
gcgaaaagggcttaaattcgcgaaaatcgcgaaagtttctgttcgcgaaa
gtttctgttcgcgaaagtttgtacgcctaaagtacattacctttttgtaa
aagatgtaATTATTCCTTTGTCAATTTATTACAAAATTTTACTAATACAA
ACACCAACTTATCACCGATACTGCAATTAGGGCAAACTTTCCGGCTGACA
TCTagcaaaatctcaaaagttaaattttgaaagaaaaaatttctttattt
actaAGAAATTTGATTTCGATAAATTTTTTTACTAGTCAATTCTAGATGA
CTTATTCAGACATAGTAAAAGATAAGCAAGAAATATTTGGAGGGACAAAC
AAAATATCATCTCGTTACATTTATATCATATAACAATCATAATATTGTAT
TACACGAATTATTAACGACTCCAGTCTTTTTTTTCACAGACTTTTAGAAT
CCTCAACCGTCATGATTGGCTTGAATTACAGGAGTTCATTATCAAAATTT
CGTTGGATTGATGGTAGTACTTCAGTGTATCGGGACTGGTGCTCAAACCA
ANATTTCGTTGGATTGATGGTAGTACTTCAGTGTATCGGGACTGGTGCTC
AAACCAACCCAATCTTGAAAATGGACTTTGTATTGGATTCCAAATTAATC
CATCAGGGACTGAAGACAGAGGTTGCTTCAAAAGTATTGATTGTGACGAA
ATACATGACTTTGTTTGTCAACTACCCGGCGTAGATTTAAAGAAATCTGT
GGATACGATAAAAAGAACGCTAACTAAAGTTAAAAAAGATTGTCACCGTT
GTAGAGATTAGAAAAAGATGATAAATGCATGGTAGATTAGTAGAATGTAA
TATTGAATGTTTCACCATCATTGTTCCTGGGGAATTGTTGGAgaatatga
aaaattttgaagctcAATTTCATTTGTTCACAGACCCATTGGGTTTGGAT
TTCCAACCCACTGGTATATTTGGCTAAAATATTGTCCCTGATGGGAAAAA
TATCCACCAATCTCAGTCCCACTTTAGattgactttgtttttatccccat
ttgaagtccaatgaaaaaaattgtactccaaaccCATCCGATTGgatttt
tttatctaagtaCTACATTCTCACCTATCCCCGTTTGGATTTCgataaaa
ttttcattcatgCAATAGGAAGAAGTTCCACggaggctgtgagacaggga
tgtgtttttttgcttaaaataaagaatttgcAATACCAGGACGACTAGAC
TTGAAGATTTGATAAAGAGCACTTAATCAATGATaatatttaaatcattt
ttattattCTCTTTTCATTAAAACTATACTAATTATTTATTATTCATAAC
TTTATGAGAAAAATGTACACTTTCAGTATATtatatttctttcatttcat
aaattttcataaataaaCTTACTCCATATTAAATAATAGCTTAGGATTTA
ATATTTTTCGTTCGTAGCCTCAAGTTAGCAGATAATCACCCCTAATTGCA
AGTAATCTAAAAACTAATCTGGGTGTTATTAAAAGGCCCTTAAAAATCAA
CTAGACTGGTACCAAAGACGATAAGACTCTTCATTTTTAGGAAGTTAGAA
AATTAACAAATGCTACATGTTTTATTGGTGATCTCATTTTTCTTGATAAT
AGTCTTTTTTTCATTGGGTACNAAATGCTACATGTTTTATTGGTGATCTC
ATTTTTCTTGATAATAGTCTTTTTTTCATTGTGTAGAACCAATCATCAGA
TTTAGGACATAATCCTACCCACAGTATTTGACTTCTACAGTATGATTCTA
CTGttttaagttcaaaatatttttagggtatCGTTCATGACAGTTTGGTA
GTTTGATCATGGAGGTGTCTACTCGGACACTGCAACTGGCTTCTTTACAA
CCTTAACAGCTGCAACAACTTTTGGTTTAGCTTCTTCAGGAGAAGCGATT
GTTTGGCTTTCTACATGGGCAGGTTCGTCTCCATATCTAGCAGCAAGTGG
TGCAGCATCACGTCCAAACCGACCATTTAACCATTGATCTGCTTCTCTGC
CAAAACGTCCATTCAACCATTGGTCAGCCTCACGACCGAATCTACCATTG
AGCCATTGTCCCATTTCACGTCCAAATCGACCATTCAACCATTGTCCAGC
CTCACGTCCAAAACGGCCGTTTAACCATTGTTCAACTTCGCGTCCGAAAC
GGCCGTTCAACCATTGTTCTTTTGCCTCTCGTCCGAATCTGCCATTAAGC
CATTGGTCAGCTGCTTCACGTCCAAAACGACCATTTAACCATTGATCAGC
TGAAGCTTCTCGACCGAAGCGACCATTTAGCCATTGGTCGGCAGAACGTT
TTCCGAAACGGCCGTTAAGCCACTGGTCAGCAGACCTTTTACCGAAACGG
CCATTTAACCATTGATTGGCAGATCTCTTACCAAAGCGTCCGTTAAGCCA
TTGTTCTGCAGCATCGCGGCCAAATCGTCCGTTCAGCCATTGCTCAACTT
CACGACCGAATCTTCCATTCAACCATTGATCAGCTTCACGTTTACCGAAT
CTACCGTTCAACCACTGTTCCGTTGCTTCACGCCCGAAACGACCGTTCAA
CCATTGTTTCAACTCACGGCCAAATCTACCTGATACCAGTTGTCTCTTTC
CAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00033524-exon-sc0001065-1491911889:23373..23570 | TCONS_00033524-exon-sc0001065-1491911889:23373..23570 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1510915933:23373..23570 | TCONS_00033524-exon-sc0001065-1510915933:23373..23570 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1575043694:23373..23570 | TCONS_00033524-exon-sc0001065-1575043694:23373..23570 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1491911889:24412..25588 | TCONS_00033524-exon-sc0001065-1491911889:24412..25588 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1510915933:24412..25588 | TCONS_00033524-exon-sc0001065-1510915933:24412..25588 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1575043694:24412..25588 | TCONS_00033524-exon-sc0001065-1575043694:24412..25588 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1491911889:25654..26625 | TCONS_00033524-exon-sc0001065-1491911889:25654..26625 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1510915933:25654..26625 | TCONS_00033524-exon-sc0001065-1510915933:25654..26625 | Clytia hemisphaerica | exon |
| TCONS_00033524-exon-sc0001065-1575043694:25654..26625 | TCONS_00033524-exon-sc0001065-1575043694:25654..26625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001065 | supercontig | sc0001065:23373..26625 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002544 | FMRFamid-related_peptide-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007218 | neuropeptide signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007218 |
neuropeptide signaling pathway |
Blast
The following BLAST results are available for this feature:
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