TCONS_00031036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00031036
Unique NameTCONS_00031036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00031036 ID=TCONS_00031036|Name=TCONS_00031036|organism=Clytia hemisphaerica|type=transcript|length=755bp
tttagaagaaaaatacaaaaaatggaTCCAGGACTGAGAAAACAACTCGC
ATTGCAAGCAttggaacaagtatcaagcccaaGTTATCGTTCAGCATCCC
CACTTTTGAAAGAGGCTGGAACACCTGCCCCTTTTCTTCCTTCAATGAAG
AAAGATTTATttGCCAGTACAATTACGGAAAAACCTTCTCTCTTTGATTC
ATTCAATTCGAAGGCAAATGAATCTAGAGGATCTGAATCAAGTTTTTATC
ATCAGCAATCATTCTTAAATGAAAGTAATGCTACAAGAAATGACACAATG
AATTTCTCGCTGAGAGCAGAACCACAGGATCctcagattgaaaatTGTAT
GGGAATGTTCGGTCAATTCATGGACCTTTATTCAAACCATCCACATTCTG
GTGATATCTTTGAATTGATTGACCAATATGAACAAaCGTGTCGGAAAAAT
ATCAAGCAATTATTGGAATTTATCAATAAGACTGACCCTAGTCGCAAAAG
AATGAAGAAAGCAATCAACCTTTTGAACCAACTTTATCAAGAATGTTACA
CTTGGAGGCTTCTTGGATCTCTAGTACATGACCGTTTGATGACAGAATCT
ATGGAGGAAATGGATGAGGACTTGGATGAACCAACCTACCttgtaattct
attgttttttaccATTGTAATGTAAATGCCTGTTATAGATCTTGGCTGac
gaaatcaaagaaaattacCTTCTGACTATTACTCGAGTCAATTATTTGGT
TGAAC
Run BLAST on NCBI

transcript from alignment at sc0000871:19901..23667-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00031036 ID=TCONS_00031036|Name=TCONS_00031036|organism=Clytia hemisphaerica|type=transcript|length=3767bp|location=Sequence derived from alignment at sc0000871:19901..23667- (Clytia hemisphaerica)
TTTAGAAGAAAAATACAAAAAATGGATCCAGGACTGAGAAAACAACTCGG
TGTGAAGAAATGTATCTTTTCCAAGCTTTTCCTTTTCCATTTAATATATT
CACTTTGTTTTTTTTCAAACAATTTAATTTGATAGAAATATCAACCATCA
TCGTTTTCAATTAGAATTTGTACCTTAGTAACAACTTTATACCAAATATT
TAGCATTGCAAGCATTGGAACAAGTATCAAGCCCAAGTTATCGTTCAGCA
TCCCCACTTTTGAAAGAGGCTGGAACACCTGCCCCTTTTCTTCCTTCAAT
GAAGAAAGATTTATGTAAGTTTGTCGTTTTATAATTACTATAATCTATTG
TATCCAAATGTATTTTCTTTTTAAATCTTGCAATAATTTCAGGGATTTTT
CTTAGCCCCTTTCTGCCCCTTTTAGTATTTGAAACTCAATCCAGAATAGA
AAAAAAAATTTTTTTGTTGTTCACAAGCAAAAATAACTTACTTTAAGGGT
TCCCGCCAAAATTAAATATTTTGCTCACTAACCAAATAAGTTCCCCCCAA
ATTAAGTTCCCGCCAAAATTAAATTTTTTGTTTCCTTGCCTAAATAACCC
CTGAAATTCATCAAAATTGCTCAAAATAAGGCAAAATAGAACAGATTTAC
ACTGTCATTCGCCAAAATTAGTTCCCGCCAAAATTAAAACAATTCTCTAT
TCGCTAAAATAAGTTCCCGCCAAAATTTAAAATTTTTGAAATATTTGCTG
CTCCCCAAAATTAGTTCCTGCCAAAAAAAGTTCCCTTAAGGTATATTATA
TCTACATATTCACCAAATTTTTTGGGAAATTTCACCCCCTAAACCCCCAC
CACGGCTTTGTCCTGGACCCACTGGGGACTTTATAAGCCCCCTCCAGACC
CTCAGCTTCATCATTAATGCCACAGTTTCGCTGAGCAGATGATCTTTTAG
GTTGCTAGTTTGGATGTTTTGTGTCTGAGTGTAAAAAGTATTTAAAAATA
ATTCTTGAAATTTATATTTTTAGTTGCCAGTACAATTACGGAAAAACCTT
CTCTCTTTGATGTGAGTGTTTTCACTTTATCTTAATTTTTGGCGTGTTTT
CTTATAAACCTAGCTATAGAAGATGAAGACTTGATATGTTAAGTATGTAT
GTAATTTAAAGCCATTGTATACATTTTGGCTGTTTTCTTGTCTTGCAAAA
CAATAAAAAACTTATATCTATTAAAATTGATACTATTTTTTGTAATTCTT
GTGTACAACATTGTTTGCATCAATGTGTTCTAATTTTATGGTCTAGAGCT
TGACATATAATTTCAAAAAACTACCCGTTCGAGACAACTCGTTGGCAATT
AGATTATTTCTTGCTTCCCTTGCTTCAAATGTACTGTCCAGCTCTCAATA
ATTTGAAAAACTTTGATGCCAAAATAGAGGAGTGAAATTAAAAATATTAT
ATGAGATTCTTCAGGTAGTTGCGGCAAAAACATGCAGTGCTCTTATTTGT
GATTTGTTCTTTGCTAAATAAAAAGATTTTTTCGTTTTCAATTGGAAAAG
AATTTGAAATGTCATTAATAAATAAGGTTACATTCGAAAAGATGTAAAAA
AGAAAAGAGATCTAAAAGAGCAAGCAAGCATTGCCAGACATTAAAATAAG
TTAATGCAGATGAAGCTTTAAAAATTTCAATACAAAGTCTGAATGAATTC
TAAACCAGGCTCTAGTATCAACTCAAAGTAAATCTTTTAATAAAAAGAAC
ACAAAACAGACAAAATTACATACAGACTACGGCTATTAATGTATAGAAGA
CTATGTGTCAATTAATCAACTAAAGTTTTTGCAAGCTCATAATAATTATT
TTAGTCATTCAATTCGAAGGCAAATGAATCTAGAGGATCTGAATCAAGTT
TTTATCATCAGGTATATTCTTTGTATTATTTTGATACAATTTCTTTATTC
AGTGTTTTATCAATCTTTTGTCATGCTTTAAATCCCATTCCTTTTGATTG
ATTTGGAAATTGAAAAGTATTGACTTGTAATTTATTTTGTTTAGTATATT
TGAAATAAACCTGATGTTAAGTTCAGTGAAGTTTTATTAGAAAAACGATT
TTCTTTTATCATTACAGCAATCATTCTTAAATGAAAGTAATGCTACAAGA
AATGACACAATGAATTTCTCGCTGAGAGCAGAACCACAGGATCCTCAGAT
TGAAAGTAAAACCTCAAATTTATTTGGAGGAATATTGAAGTTGTAATTTT
GATAAATGAATACCAAATAATATTGTCTCTGGCCTTCAGAAGGGCTACAT
ACACTAAGCAATATATCATCAGGCAATATATTGTAAAGTGCTCATCTACA
ATATATTGCCAGATCCCTTTGCTGTTTGCTGTTTATTTTATAAAGTACAG
TTCACACTATACTGTCTAATATTGTTCACCTATATCTTTTGTAGTCCAAG
TAACTTTTAAAGTTTTCTATATTGTTTTGTTTTCAGATTGTATGGGAATG
TTCGGTCAATTCATGGACCTTTATTCAAACCATCCACATTCTGGTGATAT
CTTTGAATTGATTGACCAATATGAACAAGTATTATAAAAATCATTACTTT
TTCATCTCTCAGTCCCTCCTCAAAATTTAGTCCACACTCTACTTTCATAC
ATATTCACTGTCGTTTGAATCAGTCCAATCAAAGCCAAGACTTGAAGACG
CCAGCTTTGAATTTTATACCAATTATAGAACGATTGTAGAACTGTTGATT
GTAGATTGTTGATTGTTCTTTTTAATGGATTTTTATCCCTTATTGATCTT
TTTGTTTTATTTTTCTTAAAGACGTGTCGGAAAAATATCAAGCAATTATT
GGAATTTATCAATAAGACTGACCCTAGTCGCAAAAGGTACACGCTTACAA
ATTACGAGATTTTGTGATGTGTTTTGCAAAGGTTTCTTTGTACAGATTGA
ATATTACACATGATTATGTGTGAATCTCCAAGCAATTTTAAGTACATAAA
AATTCTTGTGGCTTGATACCGGCAAATATATTGGCATATTGCCGGCAACA
CTCCTGTTGAGTCCGACAATCTATCAATTACATGGCTACACATGAAGCCA
TAGGAATAACTTCAAAAAGCTTCACAGAATCTTTTTCAATACAGAATGAA
GAAAGCAATCAACCTTTTGAACCAACTTTATCAAGAATGTTACACTTGGA
GGCTTCTTGGATCTCTAGTACAGTAAGTTAAAGATTAGAAAAACTCTCTT
CAAGTATACTCAAGTCACTTCACTTTATTATTAAGTACCAGACCATAGCC
TGGAGACTGTCATAGCTTTTCCCAGTCCTCTTTGCACTTAAACGCCATCA
GGCTAAAAAATTCCCAATATAAAATTATGTGTAGCAATTGTAGGTTAGTA
GGTTAGCTCGGTCGTTACTTGACCTCGGGCAATATTTCTCAGTAAAGCCC
TCAATAACCGGTCATTATTGTATTATTTATTTACTTTTTTATTTATAGAA
GTGTATTTCTCAGGTCTATTGACCTCTATGAAACAATCTTACATCTATTA
ATGTTGATTCTTCTCTTAAAAACCTGACTTTCTATTCCAGTGACCGTTTG
ATGACAGAATCTATGGAGGAAATGGATGAGGACTTGGATGAACCAACCTA
CCTTGTAATTCTATTGTTTTTTACCATTGTAATGTAAATGCCTGTTATAG
ATCTTGGCTGACGAAATCAAAGAAAATTACCTTCTGACTATTACTCGAGT
CAATTATTTGGTTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017844XLOC_017844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00031036-exon-sc0000871-1575043694:23619..23667TCONS_00031036-exon-sc0000871-1575043694:23619..23667Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:23354..23464TCONS_00031036-exon-sc0000871-1575043694:23354..23464Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:22607..22644TCONS_00031036-exon-sc0000871-1575043694:22607..22644Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:21757..21813TCONS_00031036-exon-sc0000871-1575043694:21757..21813Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:21463..21550TCONS_00031036-exon-sc0000871-1575043694:21463..21550Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:21090..21181TCONS_00031036-exon-sc0000871-1575043694:21090..21181Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:20782..20846TCONS_00031036-exon-sc0000871-1575043694:20782..20846Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:20446..20523TCONS_00031036-exon-sc0000871-1575043694:20446..20523Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1575043694:19901..20077TCONS_00031036-exon-sc0000871-1575043694:19901..20077Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:23619..23667TCONS_00031036-exon-sc0000871-1510915933:23619..23667Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:23354..23464TCONS_00031036-exon-sc0000871-1510915933:23354..23464Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:22607..22644TCONS_00031036-exon-sc0000871-1510915933:22607..22644Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:21757..21813TCONS_00031036-exon-sc0000871-1510915933:21757..21813Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:21463..21550TCONS_00031036-exon-sc0000871-1510915933:21463..21550Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:21090..21181TCONS_00031036-exon-sc0000871-1510915933:21090..21181Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:20782..20846TCONS_00031036-exon-sc0000871-1510915933:20782..20846Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:20446..20523TCONS_00031036-exon-sc0000871-1510915933:20446..20523Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1510915933:19901..20077TCONS_00031036-exon-sc0000871-1510915933:19901..20077Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:23619..23667TCONS_00031036-exon-sc0000871-1491911889:23619..23667Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:23354..23464TCONS_00031036-exon-sc0000871-1491911889:23354..23464Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:22607..22644TCONS_00031036-exon-sc0000871-1491911889:22607..22644Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:21757..21813TCONS_00031036-exon-sc0000871-1491911889:21757..21813Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:21463..21550TCONS_00031036-exon-sc0000871-1491911889:21463..21550Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:21090..21181TCONS_00031036-exon-sc0000871-1491911889:21090..21181Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:20782..20846TCONS_00031036-exon-sc0000871-1491911889:20782..20846Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:20446..20523TCONS_00031036-exon-sc0000871-1491911889:20446..20523Clytia hemisphaericaexon
TCONS_00031036-exon-sc0000871-1491911889:19901..20077TCONS_00031036-exon-sc0000871-1491911889:19901..20077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000871supercontigsc0000871:19901..23667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.14729	4.56258	6.6704	6.59634	31.4577	30.2592	31.9536	31.7525	2.49267	4.4984	6.88638	0.379477	3.55828	2.57442	0.467229	0.524662	0	0.861855	2.32269	0	0	0	0.936844	2.08178	35.7189	40.128	0	0	1.54695	1.27131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00031036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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