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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024621 ID=TCONS_00024621|Name=TCONS_00024621|organism=Clytia hemisphaerica|type=transcript|length=461bp
CAATTGACTGGTGACTCTCAAAAAAAAGGTTCACCTGGCCGATTTCCAGA
AACAAGACATTTTCTTTTTGGCCTAGcAATTGGTGGTTTGGTACTGATGG
GAAGTTCAGCAATCATGatggcaaaaaataaaaaccataAAAGTGTGACC
ACAGCAGGgatttttggtttgatttcaatGGGGCTGACCATGATTGAAGC
TGTTTATTATTTGATTCAATGGAAGAGATATGGTGCGAATCCCGAACTCA
GTGAACCATTACTGGATAATGACAATGACAGTGACTGAAGACCACTTGAT
CCCTCACAGAAGTTATTGTTAATAGTTGAACATTGTAATTTTTTAGTTgt
tgatattatttttaaaagttattgTATTTTAGTAAAccatttttgataaa
taataaattattttgaaattaaaatttaaacaGATGGTTGACTTGTTTTG
CTGTTCGTATG Run BLAST on NCBI transcript from alignment at sc0000506:42151..44715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024621 ID=TCONS_00024621|Name=TCONS_00024621|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at sc0000506:42151..44715+ (Clytia hemisphaerica)
CAATTGACTGGTGACTCTCAAAAAAAAGGTTCACCTGGCCGATTTCCAGA
AACAAGACATTTTCTTTTTGGCCTAGGTAAAGTAATTTGATTACTACCAG
TTTCAGtactacaaatttgattttaaagggcataaaaattaaactttatC
AAGGTACAGctagagtctgctaaatgacgcgccttacgcgcccacgcgcc
ctcataTTTTTAACGTGCCTTAGGCACCTTACGCGCCCtggtaatttgac
gcgccctggtaatttgacgcgccctaaaaatttggagcgccctaaaaatt
tgacgcgccttaaaatattgacgcgccctgataatttgacgcgccctaaa
atatcgacgcgccctaaaaaatcGATGCcccctgataatttgacgcgccc
tgataatttgacactACCTAAGTAACTGACAGTAATGAGAACAATTGCTT
CGACTTTATTGATTTATCCTCCATATTCAAACGTCAGGTGAGTGTCTCAT
AAAGAATGTTGTTCTTATCCCAGTGTCGTTCTATGAGCGATTGAGGATAC
AAACCTTTTTCCCGAGTATTTTATTACCAAGCCATAATTCAtgttttcag
tacatgatttttttctacgttGCTGCAGTAATCACATTATTATTTTAAAT
CACTCTTTTCCAAATTGAGATGTACATTTAACAAAGACAGCGACAATGGA
AAACGTTTCAAAAATTCCCAAGTCGAAGATGATTACAAAAAGTTGGGTTC
TCTGTGAAGGGACAAATTTGTGCATTTCcctgtaaattgaatagaaataa
cGTGTAGCATGCACAAATTCTATGAAATAGACTAATAAAGTGTACAGCCG
ATAAATGGAGCGGGTCGACTTTAGGCTAATCTCTTAAGAAATGATCATTT
TGCTAACGCCGACATTCTTTTATATACCAACCATGTATGATTAGACCGGT
CCCATTATTCCGTCCGTCAAAACCGTCGAAAACTTAAGGTACATCAAAAC
CCTAGGGCGTGTCGAAATCTTAGGGCGCATCAAATTTTTAAGGCGTgtcg
aaattctagggcgcgtcgaaatcatagggcgcgtcaaatttttaaggcgc
gtcgaaatcatagggcgcgttaaattttgaaggcgcgtcaaaattttagg
gtgcgtcaaattttgaaggcacatcgaaattctagggcgcgtcaaatttt
gaaggcgcgttgaaattctagggcgcgtcaaattttgaaggcgcgtcgaa
atcatagggcgcgtcaaatttaaGGCGCGTTAGAAATATGAGGGCGtgtg
ggcgcgtgggcgcgtaaggcgcgtcatttagcagactcgtacAGCTATCA
TGAAAAACTGTTGTAAAATTCGTATTGTCAACAGTTATTCCATCCCAATA
TATCAACATCCAAAGTTTCTAATTCTAGACATGTGCATACTGTGGAAGCC
ATATTGAAATGAGAAATTTGGAATTTGGAAAAGAGATataatctatctat
ctattatggttgagttacaggaggctctgggagcccattcttgcaactat
agatgctttgagtaagcatcctgtcagcaccttgaactgactacccaatt
cctctcacatggcatggattgacccgggcgaaggttgtgagtgggaatcg
aaccttggtcgcctgtacaggaatcaaggttgatgtccactataccacaa
GGAGAACTGtagttgaattaaaaaaaattaaaaaacttttttgttatgAT
TGACCCAAGGCATTTGGCACTGACATGTTTGGAATACCAAAAGGTTGATA
AAATATCTGATTCTGTCTTCTAATTTTACCTAATGTGGATTAAGGGTGCA
AGAAGTgtgaaatcaaactttgaaatttcctcatTATTTTATTAAATATG
TCTTCAACAGAGTGCAGATATCTAGAATCTGGATTATTGGATGTTGATAT
CTTGGGGTGGAATCACTGTTGACAACTTTGACTTGAATTTTTAAGATTCT
TTTCATGATGACTTTGCCTGGATTGTATATCATATGTCATGCCGGAATCC
CTTCAAGTGTTAAACTCAAAAATTGTGTTGTACATTCAAAGCAAATTGGC
TTTATGTTTCAACTCAGTTCAACTTTCTTACTTTTACTTGTTCTGACTTG
TCATCAGTTGTTctcatttaaattttcaagcAATTGGTGGTTTGGTACTG
ATGGGAAGTTCAGCAATCATGatggcaaaaaataaaaaccataAAAGTGT
GACCACAGCAGGgatttttggtttgatttcaatGGGGCTGACCATGATTG
AAGCTGTTTATTATTTGATTCAATGGAAGAGATATGGTGCGAATCCCGAA
CTCAGTGAACCATTACTGGATAATGACAATGACAGTGACTGAAGACCACT
TGATCCCTCACAGAAGTTATTGTTAATAGTTGAACATTGTAATTTTTTAG
TTgttgatattatttttaaaagttattgTATTTTAGTAAAccatttttga
taaataataaattattttgaaattaaaatttaaacaGATGGTTGACTTGT
TTTGCTGTTCGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024621-exon-sc0000506-1491911889:42151..42226 | TCONS_00024621-exon-sc0000506-1491911889:42151..42226 | Clytia hemisphaerica | exon |
| TCONS_00024621-exon-sc0000506-1510915933:42151..42226 | TCONS_00024621-exon-sc0000506-1510915933:42151..42226 | Clytia hemisphaerica | exon |
| TCONS_00024621-exon-sc0000506-1575043694:42151..42226 | TCONS_00024621-exon-sc0000506-1575043694:42151..42226 | Clytia hemisphaerica | exon |
| TCONS_00024621-exon-sc0000506-1491911889:44331..44715 | TCONS_00024621-exon-sc0000506-1491911889:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024621-exon-sc0000506-1510915933:44331..44715 | TCONS_00024621-exon-sc0000506-1510915933:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024621-exon-sc0000506-1575043694:44331..44715 | TCONS_00024621-exon-sc0000506-1575043694:44331..44715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:42151..44715 + |
Blast
The following BLAST results are available for this feature:
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