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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024415 ID=TCONS_00024415|Name=TCONS_00024415|organism=Clytia hemisphaerica|type=transcript|length=4496bpRun BLAST on NCBI transcript from alignment at sc0000491:124373..155119- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024415 ID=TCONS_00024415|Name=TCONS_00024415|organism=Clytia hemisphaerica|type=transcript|length=30747bp|location=Sequence derived from alignment at sc0000491:124373..155119- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024415 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 1399.03 bits (3620), Expect = 0.000e+0 Identity = 706/1480 (47.70%), Postives = 1007/1480 (68.04%), Query Frame = 3
Query: 111 GFCLYFAKINKTKEITAQNIHNEITLSVLDCQSRGLLDAVHQTLTDVFIPAV--SSSNVFQNADKKNGGQSRARFINSLSTFIDALTGAQQSLSDVVKLSKCDALDLSKLTTPALYQSAAASSDTLEVIETQTKAWIKEIEQILAETEQMRREADNVGPKAELDHWKKRMSKFNSLLDELKSQKCKAVLGVLLVAKSKLLKTWKEIDKKITDYANEAKDNVKFLYSLEKFCEPLYNSDPVSMIESIPGLLNAIRMVHNYSRYYNTSERMTAIFIKVTNQMITACKDYITQHGSLSIWDIDYDEFQVKSQNCIRLNEEYQKTFMSTKRKIEDNEDERQFDFSETYIFGKINSFVRRLQKILDLMQIWKSWQSLERSHLEGIEMLNSKFQFLVSNVKKRNYDFLDYRKSDFDSDYEEFKNSIKDLEIQMVIFMERVLNKISTLPTSLNMLSRFEWLDLPALKDPINEYYIKLLLEFGKDLETTMRLYQKQKNDPPIGRNLPPIAGKISWARQLFRKIQSPMEYFQNYSAIFKLEDAKKIVKNYNKTAKVLLEYEMLYHQAWLEQIEVAKSGLQASLLVRHPDSKEVFVNFDPHILILMRETECMDKMNLEIPHTAQPFKQKQSVFKANYNKLQMLMTEYKRVLGKIPVVVKPLMSPHLVKLDAALEPGLCMLTWNSLNFNAFIESVYETLNEVELMVDRVIDLIEFRIEKILNDIANTKLVELPTDTPWTIDEFIKRTEVLCKKGAETIESKSQYVEKATNELCMMLL-------------TVEQNVEHQNENFDEDEDGERQQSPDLVKSRPKSRLGSAAVSPTRAAAKRKREMLEVLVERANELLNYYNHQNLEALNKVIRSTLDAIRKRIHATATILYKERTQQNLEETGSLAPFFYSDFVLKIPNVSMSPSLDEIQQAINKCTHVILSITKNITMWDSNV---KGLTTSSSDELETKTDFEHETSLSVNEAATRSRAGSLLSSVNDDDGLSTIQSIAQVRKSYYRSVSHNKEIAKLVGSMSTIINSQKKEVTGAFSHYEQYNTIWLVDKEMSMEKFLQKNPTLDEFEQQILSYKEIEEKVKMEDERMNVGSVCLLTEQIKLGIITEIKSWIVIYGRSANSKYRTAMVDFFKFINSFTKQLSRPLNDLDDIRFAMVTLIELRNQEIVMDMEVTPIEDSFAMLTKYNITVSKDDIERVDTLRYAWKNLLLLAKEVQDELLQLQPVFKSDLTAKVEQFKQDSEDFVKSYQKRGPMTPNLPPHEANERLITYQNRFDTLYRQYVTYSGGEELFGLPITEYEGLQQIRKELSLLHKLYGLYNDVTHKVNGYYDIPWIEVNTDKINGELQDFQTRCRKLPRGLKDWQAYLDLKKQIDDFNESCPLLEMMANKAMKARHWKKIGEITNHQFDVESETFLLKNIMEAPLLENKEDIEDICIAATKEKDIEAKLKTVIADWNHQELTFATFKSRGELLLRGDSTSEI 4496
G C++F + + +K IT NIH E++ ++LD GLL++V + L+D+FIPA+ +S + ++ R F++SL F++ L+GAQ+SL + V L KCD L+L L P Y + A + +TL IE K WIK+ EQ+LAE Q+ +EAD+VGP+AEL+HWKKR+SKFN LL++LKS KAVL VL AKSKLLKTW+E+D +ITD NEAKDNVK+LY+LEK C+PLY+SDP+SM+++IP L+NAI+M+++ S YYNTSE++T++F+KVTNQ+I+ACK YIT +G+ SIW+ D + K + I+L +EYQ F TK+K++ N + +QFDFSE YIFGK +F RRL KI+D+ K++ L+ S +EG+E + +K+Q +V+ +KK+ Y+FLD RK DFD DYEEF DL ++ FM+ KI +L ML +FE L++P L I++ Y +L +G D++ +LY KQK DPP+ RN PPIAGKI WARQLF +IQ PM+ FQ + A+ +AK I+++YN+ AKVLLE+E+L+H+AWL QIE GL+ASLLV+ P + E+FVNFDP ILIL RETECM +M LE+ A QK+ +K N++ ++M++ EY+RV KIP ++ L+ PHL K+D AL+PGL LTW SLN A++E+ + + ++EL++DRV DLIEFRI+ IL ++++T L +LP + P T +EF++ T+ LC GA+ + KS VE+A NEL MLL + E +V ++NE+ + E+G + +R + L + RK++ E+L E A ELL+++NHQN++AL KV R+TL+AIRKRIH++ TI +++ + + SL P F + L IPN+ M+P+L+++QQ +NK I+S+ K + W S + K + L++ D + + + NE ++SVN + T K+YY++VS NKEI KLV +STIINS KKEV + +++YN IW KE +++ F+ ++P L EFE QIL ++ +E+++ E E + VGS+ L T +K + E K+W+V+ GR N KYR+ M + F I F K+L+RP+ DLDDIR AM L E+R ++I +D +V PIE+S+A+L +Y + +++++I++VDTL YAW+ LL A EVQ++L+ LQP FK +L + VE F QD F Y GPM L P EA++RLI +QN+FD +YR+Y+TY+GGEELFGLP T+Y L +I+K+L+LL K+Y LYN V VN YYDI W EVN +KIN EL +FQ RCRKLPR LKDWQA+LDLKK IDDF+E CPLLE MA+KAM RHW++I +T H DV +E+F L+NIMEAPLL+ KE+IEDICI+A KE+DIE KLK VI +W+++ TF +FK+RGELLLRGDSTSEI
Sbjct: 125 GVCVFFIRTDPSKAITPDNIHQEVSFNMLDAADGGLLNSVRRLLSDIFIPALRATSHGWGELEGLQDAANIRQEFLSSLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDYLTLANNPETLGKIEDCMKVWIKQTEQVLAENNQLLKEADDVGPRAELEHWKKRLSKFNYLLEQLKSPDVKAVLAVLAAAKSKLLKTWREMDIRITDATNEAKDNVKYLYTLEKCCDPLYSSDPLSMMDAIPTLINAIKMIYSISHYYNTSEKITSLFVKVTNQIISACKAYITNNGTASIWNQPQDVVEEKILSAIKLKQEYQLCFHKTKQKLKQNPNAKQFDFSEMYIFGKFETFHRRLAKIIDIFTTLKTYSVLQDSTIEGLEDMATKYQGIVATIKKKEYNFLDQRKMDFDQDYEEFCKQTNDLHNELRKFMDVTFAKIQNTNQALRMLKKFERLNIPNLG--IDDKYQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWARQLFHRIQQPMQLFQQHPAVLSTAEAKPIIRSYNRMAKVLLEFEVLFHRAWLRQIEEIHVGLEASLLVKAPGTGELFVNFDPQILILFRETECMAQMGLEVSPLATSLFQKRDRYKRNFSNMKMMLAEYQRVKSKIPAAIEQLIVPHLAKVDEALQPGLAALTWTSLNIEAYLENTFAKIKDLELLLDRVNDLIEFRIDAILEEMSSTPLCQLPQEEPLTCEEFLQMTKDLCVNGAQILHFKSSLVEEAVNELVNMLLDVEVLSEEESEKISNENSVNYKNESSAKREEGNFDTLTSSINARANALLLTTVT--------RKKKETEMLGEEARELLSHFNHQNMDALLKVTRNTLEAIRKRIHSSHTINFRDSNSASNMKQNSL-PIFRASVTLAIPNIVMAPALEDVQQTLNKAVECIISVPKGVRQWSSELLSKKKIQERKMAALQSNEDSDSDVEMGENELQDTLE----IASVNLPIPVQT--------KNYYKNVSENKEIVKLVSVLSTIINSTKKEVITSMDCFKRYNHIWQKGKEEAIKTFITQSPLLSEFESQILYFQNLEQEINAEPEYVCVGSIALYTADLKFALTAETKAWMVVIGRHCNKKYRSEMENIFMLIEEFNKKLNRPIKDLDDIRIAMAALKEIREEQISIDFQVGPIEESYALLNRYGLLIAREEIDKVDTLHYAWEKLLARAGEVQNKLVSLQPSFKKELISAVEVFLQDCHQFYLDYDLNGPMASGLKPQEASDRLIMFQNQFDNIYRKYITYTGGEELFGLPATQYPQLLEIKKQLNLLQKIYTLYNSVIETVNSYYDILWSEVNIEKINNELLEFQNRCRKLPRALKDWQAFLDLKKIIDDFSECCPLLEYMASKAMMERHWERITTLTGHSLDVGNESFKLRNIMEAPLLKYKEEIEDICISAVKERDIEQKLKQVINEWDNKTFTFGSFKTRGELLLRGDSTSEI 1581 The following BLAST results are available for this feature:
BLAST of TCONS_00024415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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