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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024369 ID=TCONS_00024369|Name=TCONS_00024369|organism=Clytia hemisphaerica|type=transcript|length=1487bp
TTTAAGTGTTCACGGAGCTGCGGCATCGGTGAAGTCCGGCGTGACGTTCG
GTGTGTTGATCGCCGGAACAACACAGTTTTGGATAGTTCTTGCCCCAAAA
ATACAATGCCTGTCGTGTTAAAAGTCTGCAATACGCATTCGTGTCCGCGT
GAATCGTGTCGTGACGTGCAGCGTGACTTTGATATCAAATTCGACGGTGA
ACACACGTTACAAGTTCCGGGAGGTACTCTATCCATATTCTGCGAAGGAA
TGCACCGGAACAACCCAAAAGAATTCATCACCTTAAAATCAGACCCACGT
GAGAATTATTCGGAAATCTTTAGTAAGAGACTACGGAACGGCCGCTCGTG
TCCGAATAACGGACGCCGTCAACAAGAATGTGAAGATTGCATAGACTATC
CAGCGTCCGGCGTCACGTTCTTCAAGAAAGTCAGAATCGACATCAAACGT
ATGACACTAATACCTGAAGATATGACGTTTGCAGACCGCTATGGGCGTAA
CCCGCCCGGATTCGCCAGTGCGGGCGATTGCTATAGCCGCATCAAATGTG
CTCAAGGACGATTCATGGTCAATCTTCTCGGTACTGGCTTAAAAGTTCAA
GAAGGTGTCATGTGGGCATCACGTGGATATCATACGTCACAGAAAATACG
CAGACATAAGGATGGTCAAGTGGTTTATGGAATCTGTGGCGGTTATTGCG
GAATGTGTGCACCCGCTAATAGGAATGGTTTGGAAGTCAAATTGTATTCT
TTGAGGTGACAATAAATGGACCTCAAATGGCGAGAATCTAGAAAAGAGAC
ATCAATAAAAAGAATAGACCTGTAAATAATATTAACCTATGTGTCATCTA
GAGTGGCCGCAAGATCTGTGACGTAAGCCCTATCCAGTCGCTTTTACAAT
CTTAAGTACCAAAAGTTTCAGCCCTTACTGTTTTCTCTCTCAGGATATAG
GGGGTACCTCttttgttgtaggttttaaaGGGTATCCGCTGGTACCCTTG
AGTTTTGTCTTGTGATTGTACTAGCAAAGCAGAGAGGTCGATAAGGCCCT
GCTTGTTAGAGCTAaaaatccaagcttaaaaaatcaattGAACTTTATTT
TTCTTGCGACCCCCCTAGAACATGTTTTTTTGTAACATAGATAGTCACTT
TTATATAATATAcatataaatttgaattttatttgaaaaattttaatttt
ccttttgctttatttttctaagtattttttatacttttatgTACCTATTT
TTGTGCCTCGTTTTAACTCTTGGATATTCTTTATTTGAATTTTCTATTAC
TTTCCAATTTCTAAATACTGTGATTTATCCAAATAAAATTTGAGACTAGT
TTTTTTTCTAATGGAAtccaaaaattatttaattgaGATTCTTAAAATTC
AAATGACGGCTTGATGTCTGGCAATACTTTCATGGTGCAGTGGAGTCCCT
acaactcgaacacgcacggggaatacAAATTTGATCG Run BLAST on NCBI protein sequence of TCONS_00024369-protein >TCONS_00024369-protein ID=TCONS_00024369-protein|Name=TCONS_00024369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
FKCSRSCGIGEVRRDVRCVDRRNNTVLDSSCPKNTMPVVLKVCNTHSCPR
ESCRDVQRDFDIKFDGEHTLQVPGGTLSIFCEGMHRNNPKEFITLKSDPR
ENYSEIFSKRLRNGRSCPNNGRRQQECEDCIDYPASGVTFFKKVRIDIKR
MTLIPEDMTFADRYGRNPPGFASAGDCYSRIKCAQGRFMVNLLGTGLKVQ
EGVMWASRGYHTSQKIRRHKDGQVVYGICGGYCGMCAPANRNGLEVKLYS
LR Run BLAST on NCBI transcript from alignment at sc0000489:181742..186161- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024369 ID=TCONS_00024369|Name=TCONS_00024369|organism=Clytia hemisphaerica|type=transcript|length=4420bp|location=Sequence derived from alignment at sc0000489:181742..186161- (Clytia hemisphaerica)
TTTAAGTGTTCACGGAGCTGCGGCATCGGTGAAGTCCGGCGTGACGTTCG
GTGTGTTGATCGCCGGAACAACACAGTTTTGGATAGTTCTTGCCCCAAAA
ATACAATGCCTGTCGTGTTAAAAGTCTGCAATACGCATTCGTGTCCGCGT
GAATCGTGTCGTGACGTGCAGCGTGACTTTGATATCAAATTCGACGGTGA
ACACACGTTACAAGTTCCGGGAGGTACTCTATCCATATTCTGCGAAGGAA
TGCACCGGAACAACCCAAAAGAATTCATCACCTTAAAATCAGACCCACGT
GAGAATTATTCGGAAATCTTTAGTAAGAGACTACGGAACGGCCGCTCGTG
TCCGAATAACGGACGCCGTCAACAAGAATGTGAAGATTGCATAGACTATC
CAGCGTCCGGCGTCACGTTCTTCAAGAAAGTCAGAATCGACATCAAACGT
ATGACACTAATACGTAAGTCGTTTAGATTTTGATTTCTTAGGGAATATAA
ATACATCATGGGCTGTAACCCTTTGAAAATTATGCGAATAAACAGATCCA
GTTAAAATTTCATGTAAAATTCTGACGAAGAAATCCATTCAGGTAGTCTG
TCTATTTTAGATTCTCGCAAAAAAGCTTAAATTATTAGATATATTTGCCT
TCTTAAGCTATGAATGCAAAGAGTATACTGAACTAAAAATGATATAATGT
GTTATTTTTGTTTTGTCAATTTCAATAAAGTTCTGTTGACTTTCTCTCTT
ATTCGATTTATAAGGGGCGAAGAATCCTCTTCGGATTAGAGAAAAATTCG
AATTGCATTTGGAACCACTTTTTTTATCAAATAAATATTAATTCTTTTAT
TTAGCTGAAGATATGACGTTTGCAGACCGCTATGGGCGTAACCCGCCCGG
ATTCGCCAGTGCGGGCGATTGCTATAGCCGCATCAAATGTGCTCAAGGAC
GATTCATGGTCAATCTTCTCGGTACTGGCTTAAAAGTTCAAGAAGGTGTC
ATGTGGGCATCACGTGGATATCATACGTCACAGAAAATACGCAGACATAA
GGTATGGTGTTTTTCCTTTTGATAATTCATTTTGAAACTCTTTTCTGCTA
CTGGTTACTAAAATTTTTCCAAAATTTAAATAAGAGAAAGCGAAGGCAAG
AGAAATCGAAGCTACTTATTTCCCATCCAAAACCCGCATAGAACGCGCCG
TAATCATGACGACGGATTGTATCTAACGATTCCTTTGTTTTGGAGGACTA
CATTCTTTTGAAATCGAACCTTAGATTTTAGTTCGAGTCCGGCTTTTGTG
TAAAAACTACGCGCGGGCGTTCTGGATGGGAAATCAGTGGTTTCATTTCA
TTTCATTAAATTTCATTCAGTCTTACCTCTAATCCTTCGGGCTTGAGACT
CAATGGGAAAATGATGACAACCTAATTTCAGGATAGTGAGAGTTGAATCG
ATACATGTAATTAAACGTGCTTACTATCATAAAGTAATTTTGTTATGTCA
TTTCTCGGCAGCGTGTGATTTCTCACAGGAAATTATATTTTTCAAAAATC
GATATAAAGACGCCAGCTTTCCTCGCATATTTATCAAAAAATTCTTTACT
GCACGTTTTAGTATCAAAGCTTTGAGAATATTCAATTAGACNAGCTTTCC
TCGCATTTTTATCAAAAAATTCTTTACTGCACGTTTTAGTATCAAAGCTT
TGAGAATATTCAATTAGACAAATGGAGTCTCTTCCTAAACATAGCTATAA
CAATCTTATGGATTTGATTACGTCTTGAAACTTCAACTCGTGACGTTTGA
CACTCATCCCTTTGTTTCTATATGTTGATAAGTTAGTTGTCTTATGTGAA
GCTATCATTGCGTGTTGATTGATAATTGTTTCATACCAATGGGTTTTCCA
AAAAACGAAAACACTTAGCTTTTTGCAATACTATTTGACAACATCACGTC
ACCGATTCACTTTACATTTAAAACGCTCTTTTCCGCTTGCTTCAATTAAT
TCTGTCCTGACAAAACTTGCATTTAATCTGATAAAATTGATACGTCTACC
GCTTTAACAAGTATTGGCATGCTTTAAGGAGGGGTTTGTAGGGGTTCGAA
ATACCGTTTTCCCGTCAAAATTTTTGCTGAATCCCGGAATCCCGAAAATT
GAAAAAAATAATAACACCGTCACACCGGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTCCCGTCTTTTTTTCGTCAAATCCCGTAATACCGTACTAAAAAAGGGC
CAATCCCGTCACACCGTAAAAGTACACCCCCCTTTAAGTGGTAGTGAGTG
CTAGTGAAGACACACAAGAAGGCTAAACCAAAGCAAACATAGAGGGGCTG
GGTTCAAATAATGTACTTCCGTGTCAATTTCTACAGCCACCGTCTACGAG
ATAAAAACTACTTAAGCTAATAACATTCACAAGGGAGAGAAGAAGTTATT
GCCATTAACTTCCAAGCCCGAAGGGCTACAGACTCGAGACTCCAAGGTGG
GAAACGAAGCCACTTATTTATTCCCATTGAAAGCGCGTGACCTGCGTGGT
TTTCATACGAACGCTATATAGAAAGTAAAATATATCGCCAAATTTCGAAA
AATATGCCGCGTGAAAACAAAGAAAGTGTTAGATTCAATCCATCATTTGC
GGAGCAAACTTAAGGCTTCACTTTTTGTTGCTTGAGAAAGGTTGAAGATT
CATCTCTAAGCCCTAAGGCTTTAAACTCAATGGTTATGGTTATTGCTACC
TTTTCACCTATCACCTATCACCCTGTCCATTTAGACAACATTAGAAGTTA
TTTCTTTACACATATTGCTTCATACCTGTCAACCCTTGTGCCGAAAAATG
TAGAGAAATTTTAAGATCGAATCTAATCGGGTTCAATGACCAGTCATTGC
ATTGATACCCTCCAAAAATATGTATTTTAACTATCATACAATTCCCTTCT
CCAGGATGGTCAAGTGGTTTATGGAATCTGTGGCGGTTATTGCGGAATGT
GTGCACCCGCTAATAGGAATGGTTTGGAAGTCAAATTGTATTCTTTGAGG
TGACAATAAATGGTAAGCTTTCTCGTCTTCTTTTCACATAATGTCTTTCT
CGGATATGAGAGCCGTTCGCTTCAAATTAACAATCTTTTTTTCTACCATG
TAGAAACCATATCATCGCAATCTGAGTAATTCCCTTGAGAGTGGTTTCCA
CGTTGTAACAAAAGCAAGTGCATATTTAAAACGAATGAACTTTAGTTTCC
ACTACTTCTATTAGTGTATTCATTTTCATACAAAAAGGAGCTTGTCGATA
GGCTTGACATGGTGCAATAACCATAATAACCCAAAAGCTTAAAAGAAGCT
TTAGATTCAGCGTTTTTAGCTTCTTTTTTGATTTTAGACTAGATTGATCT
TAATTTTTTGTTTTTAGGTTTCATGATGTTTCAATTTATCTTTCTTTACA
GGACCTCAAATGGCGAGAATCTAGAAAAGAGACATCAATAAAAAGAATAG
ACCTGTAAATAATATTAACCTATGTGTCATCTAGAGTGGCCGCAAGATCT
GTGACGTAAGCCCTATCCAGTCGCTTTTACAATCTTAAGTACCAAAAGTT
TCAGCCCTTACTGTTTTCTCTCTCAGGATATAGGGGGTACCTCTTTTGTT
GTAGGTTTTAAAGGGTATCCGCTGGTACCCTTGAGTTTTGTCTTGTGATT
GTACTAGCAAAGCAGAGAGGTCGATAAGGCCCTGCTTGTTAGAGCTAAAA
ATCCAAGCTTAAAAAATCAATTGAACTTTATTTTTCTTGCGACCCCCCTA
GAACATGTTTTTTTGTAACATAGATAGTCACTTTTATATAATATACATAT
AAATTTGAATTTTATTTGAAAAATTTTAATTTTCCTTTTGCTTTATTTTT
CTAAGTATTTTTTATACTTTTATGTACCTATTTTTGTGCCTCGTTTTAAC
TCTTGGATATTCTTTATTTGAATTTTCTATTACTTTCCAATTTCTAAATA
CTGTGATTTATCCAAATAAAATTTGAGACTAGTTTTTTTTCTAATGGAAT
CCAAAAATTATTTAATTGAGATTCTTAAAATTCAAATGACGGCTTGATGT
CTGGCAATACTTTCATGGTGCAGTGGAGTCCCTACAACTCGAACACGCAC
GGGGAATACAAATTTGATCG Coding sequence (CDS) from alignment at sc0000489:181742..186161- >TCONS_00024369 ID=TCONS_00024369|Name=TCONS_00024369|organism=Clytia hemisphaerica|type=CDS|length=2277bp|location=Sequence derived from alignment at sc0000489:181742..186161- (Clytia hemisphaerica)
GATGGTCAAGTGGTTTATGGAATCTGTGGCGGTTATTGCGGAATGTGTGC
ACCCGCTAATAGGAATGGTTTGGAAGTCAAATTGTATTCTTTGAGGTGAC
TGAAGATATGACGTTTGCAGACCGCTATGGGCGTAACCCGCCCGGATTCG
CCAGTGCGGGCGATTGCTATAGCCGCATCAAATGTGCTCAAGGACGATTC
ATGGTCAATCTTCTCGGTACTGGCTTAAAAGTTCAAGAAGGTGTCATGTG
GGCATCACGTGGATATCATACGTCACAGAAAATACGCAGACATAAGTTTA
AGTGTTCACGGAGCTGCGGCATCGGTGAAGTCCGGCGTGACGTTCGGTGT
GTTGATCGCCGGAACAACACAGTTTTGGATAGTTCTTGCCCCAAAAATAC
AATGCCTGTCGTGTTAAAAGTCTGCAATACGCATTCGTGTCCGCGTGAAT
CGTGTCGTGACGTGCAGCGTGACTTTGATATCAAATTCGACGGTGAACAC
ACGTTACAAGTTCCGGGAGGTACTCTATCCATATTCTGCGAAGGAATGCA
CCGGAACAACCCAAAAGAATTCATCACCTTAAAATCAGACCCACGTGAGA
ATTATTCGGAAATCTTTAGTAAGAGACTACGGAACGGCCGCTCGTGTCCG
AATAACGGACGCCGTCAACAAGAATGTGAAGATTGCATAGACTATCCAGC
GTCCGGCGTCACGTTCTTCAAGAAAGTCAGAATCGACATCAAACGTATGA
CACTAATACGATGGTCAAGTGGTTTATGGAATCTGTGGCGGTTATTGCGG
AATGTGTGCACCCGCTAATAGGAATGGTTTGGAAGTCAAATTGTATTCTT
TGAGGTGACTGAAGATATGACGTTTGCAGACCGCTATGGGCGTAACCCGC
CCGGATTCGCCAGTGCGGGCGATTGCTATAGCCGCATCAAATGTGCTCAA
GGACGATTCATGGTCAATCTTCTCGGTACTGGCTTAAAAGTTCAAGAAGG
TGTCATGTGGGCATCACGTGGATATCATACGTCACAGAAAATACGCAGAC
ATAAGTTTAAGTGTTCACGGAGCTGCGGCATCGGTGAAGTCCGGCGTGAC
GTTCGGTGTGTTGATCGCCGGAACAACACAGTTTTGGATAGTTCTTGCCC
CAAAAATACAATGCCTGTCGTGTTAAAAGTCTGCAATACGCATTCGTGTC
CGCGTGAATCGTGTCGTGACGTGCAGCGTGACTTTGATATCAAATTCGAC
GGTGAACACACGTTACAAGTTCCGGGAGGTACTCTATCCATATTCTGCGA
AGGAATGCACCGGAACAACCCAAAAGAATTCATCACCTTAAAATCAGACC
CACGTGAGAATTATTCGGAAATCTTTAGTAAGAGACTACGGAACGGCCGC
TCGTGTCCGAATAACGGACGCCGTCAACAAGAATGTGAAGATTGCATAGA
CTATCCAGCGTCCGGCGTCACGTTCTTCAAGAAAGTCAGAATCGACATCA
AACGTATGACACTAATACGATGGTCAAGTGGTTTATGGAATCTGTGGCGG
TTATTGCGGAATGTGTGCACCCGCTAATAGGAATGGTTTGGAAGTCAAAT
TGTATTCTTTGAGGTGACTGAAGATATGACGTTTGCAGACCGCTATGGGC
GTAACCCGCCCGGATTCGCCAGTGCGGGCGATTGCTATAGCCGCATCAAA
TGTGCTCAAGGACGATTCATGGTCAATCTTCTCGGTACTGGCTTAAAAGT
TCAAGAAGGTGTCATGTGGGCATCACGTGGATATCATACGTCACAGAAAA
TACGCAGACATAAGTTTAAGTGTTCACGGAGCTGCGGCATCGGTGAAGTC
CGGCGTGACGTTCGGTGTGTTGATCGCCGGAACAACACAGTTTTGGATAG
TTCTTGCCCCAAAAATACAATGCCTGTCGTGTTAAAAGTCTGCAATACGC
ATTCGTGTCCGCGTGAATCGTGTCGTGACGTGCAGCGTGACTTTGATATC
AAATTCGACGGTGAACACACGTTACAAGTTCCGGGAGGTACTCTATCCAT
ATTCTGCGAAGGAATGCACCGGAACAACCCAAAAGAATTCATCACCTTAA
AATCAGACCCACGTGAGAATTATTCGGAAATCTTTAGTAAGAGACTACGG
AACGGCCGCTCGTGTCCGAATAACGGACGCCGTCAACAAGAATGTGAAGA
TTGCATAGACTATCCAGCGTCCGGCGTCACGTTCTTCAAGAAAGTCAGAA
TCGACATCAAACGTATGACACTAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024369-exon-sc0000489-1575043694:185699..186161 | TCONS_00024369-exon-sc0000489-1575043694:185699..186161 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1575043694:185111..185307 | TCONS_00024369-exon-sc0000489-1575043694:185111..185307 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1575043694:182850..182957 | TCONS_00024369-exon-sc0000489-1575043694:182850..182957 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1575043694:181742..182460 | TCONS_00024369-exon-sc0000489-1575043694:181742..182460 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1510915933:185699..186161 | TCONS_00024369-exon-sc0000489-1510915933:185699..186161 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1510915933:185111..185307 | TCONS_00024369-exon-sc0000489-1510915933:185111..185307 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1510915933:182850..182957 | TCONS_00024369-exon-sc0000489-1510915933:182850..182957 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1510915933:181742..182460 | TCONS_00024369-exon-sc0000489-1510915933:181742..182460 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1491911889:185699..186161 | TCONS_00024369-exon-sc0000489-1491911889:185699..186161 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1491911889:185111..185307 | TCONS_00024369-exon-sc0000489-1491911889:185111..185307 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1491911889:182850..182957 | TCONS_00024369-exon-sc0000489-1491911889:182850..182957 | Clytia hemisphaerica | exon |
| TCONS_00024369-exon-sc0000489-1491911889:181742..182460 | TCONS_00024369-exon-sc0000489-1491911889:181742..182460 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000489 | supercontig | sc0000489:181742..186161 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00024369 vs. Swiss-Prot (Human)
Match: ATS9 (A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens GN=ADAMTS9 PE=1 SV=4) HSP 1 Score: 192.2 bits (487), Expect = 8.025e-52 Identity = 102/248 (41.13%), Postives = 142/248 (57.26%), Query Frame = 1
Query: 7 CSRSCGIGEXXXXXXXXXXXNNTVLDSSCPKNTMPVVLKVC-NTHSCPR-ESCRDVQRDFDIKFDGEHTLQVPGGTLSIFCEGMHRNNPKEFITLKSDPRENYSEIFSKRLRNGRSCPNNGRRQQECEDCIDYPASGVTFFKKVRIDIKRMTLIPEDMTFADRYGRNPPGFASAGDCYSRIKCAQGRFMVNLLGTGLKVQEGVMWASRGYHTSQKIRRHKDGQVVYGICGGYCGMCAPANRNGLEVKL 744
CS SCG+G N C + P K C N ++C ++C++V+R DGE+ L + G L IFC GMH ++PKE++TL EN+SE++ RL N CP NG R+ +C+ DY A+G + F+K+RID+ M +I D+ FA +P FA+AGDCYS KC QGRF +NL GTGL + E W S+G + I++ DG V G CGGYCG C P++ GLEV++
Sbjct: 1689 CSVSCGVG--VMQRSVQCLTNEDQPSHLCHTDLKPEERKTCRNVYNCELPQNCKEVKRLKGASEDGEYFLMIRGKLLKIFCAGMHSDHPKEYVTLVHGDSENFSEVYGHRLHNPTECPYNGSRRDDCQCRKDYTAAGFSSFQKIRIDLTSMQIITTDLQFARTSEGHPVPFATAGDCYSAAKCPQGRFSINLYGTGLSLTESARWISQGNYAVSDIKKSPDGTRVVGKCGGYCGKCTPSSGTGLEVRV 1934
The following BLAST results are available for this feature:
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